Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-06-21 17:39 -0400 (Fri, 21 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4506
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 202/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-06-19 14:00 -0400 (Wed, 19 Jun 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_19
git_last_commit: a7f41b2
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on palomino3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.10.0
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
StartedAt: 2024-06-20 01:15:34 -0400 (Thu, 20 Jun 2024)
EndedAt: 2024-06-20 01:17:51 -0400 (Thu, 20 Jun 2024)
EllapsedTime: 136.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-06-20 01:17:26.092][biodb::testContext]
biodb.INFO [2024-06-20 01:17:26.096][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:26.097][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-06-20 01:17:26.098][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:26.100][biodb::testContext]
biodb.INFO [2024-06-20 01:17:26.101][biodb::testThat]
biodb.INFO [2024-06-20 01:17:26.103][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-06-20 01:17:26.104][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:26.105][biodb::testThat]
biodb.INFO [2024-06-20 01:17:26.503][biodb::testContext]
biodb.INFO [2024-06-20 01:17:26.505][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:26.506][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-06-20 01:17:26.507][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:26.508][biodb::testContext]
biodb.INFO [2024-06-20 01:17:26.521][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-20 01:17:26.532][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-20 01:17:26.541][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:26.542][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-20 01:17:26.543][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-20 01:17:26.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.548][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-20 01:17:26.565][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-20 01:17:26.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.571][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-20 01:17:26.572][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-20 01:17:26.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.577][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-20 01:17:26.578][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-20 01:17:26.580][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-20 01:17:26.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.585][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-20 01:17:26.586][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-20 01:17:26.587][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-20 01:17:26.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.592][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-20 01:17:26.593][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-20 01:17:26.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.597][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-20 01:17:26.599][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-20 01:17:26.600][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-20 01:17:26.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.605][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-20 01:17:26.606][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-20 01:17:26.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.611][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-20 01:17:26.612][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-20 01:17:26.613][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-20 01:17:26.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.618][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-20 01:17:26.619][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-20 01:17:26.620][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-20 01:17:26.622][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-20 01:17:26.623][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-20 01:17:26.624][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-20 01:17:26.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.629][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-20 01:17:26.631][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-20 01:17:26.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.635][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-20 01:17:26.637][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-20 01:17:26.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.642][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-20 01:17:26.645][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-20 01:17:26.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.652][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-20 01:17:26.653][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-20 01:17:26.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.658][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-20 01:17:26.659][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-20 01:17:26.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.665][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-20 01:17:26.666][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-20 01:17:26.670][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-20 01:17:26.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.674][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-20 01:17:26.676][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-20 01:17:26.677][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-20 01:17:26.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.684][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-20 01:17:26.713][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.728][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-20 01:17:26.730][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.737][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:26.739][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.740][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.742][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.743][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.744][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-20 01:17:26.745][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:26.747][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.748][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-20 01:17:26.749][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:26.750][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.751][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.753][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:26.753][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-20 01:17:26.753][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-20 01:17:26.753][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-20 01:17:26.753][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-20 01:17:26.754][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:26.755][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.756][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.757][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:26.758][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.761][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.762][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.764][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:26.765][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:26.766][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.767][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.769][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-20 01:17:26.770][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.772][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-20 01:17:26.773][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.774][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:26.775][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.776][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.778][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.779][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.780][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-20 01:17:26.782][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:26.783][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.784][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-20 01:17:26.785][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:26.787][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.788][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.789][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:26.789][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-20 01:17:26.789][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-20 01:17:26.789][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-20 01:17:26.789][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-20 01:17:26.791][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:26.792][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.793][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.794][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:26.796][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.798][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.799][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.800][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:26.801][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:26.802][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.804][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.805][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-20 01:17:26.807][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.808][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-20 01:17:26.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.811][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:26.812][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.813][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.814][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.816][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.817][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-20 01:17:26.819][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:26.821][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.823][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-20 01:17:26.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:26.827][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.829][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.831][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.833][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:26.835][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.837][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.839][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:26.840][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.841][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.842][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.844][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.845][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:26.846][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:26.847][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.848][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.850][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-20 01:17:26.852][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.853][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-20 01:17:26.854][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.855][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:26.857][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.858][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.859][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.860][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.861][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-20 01:17:26.863][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:26.864][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.865][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-20 01:17:26.866][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:26.868][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.869][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:26.870][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.871][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:26.872][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.875][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:26.877][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:26.878][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:26.879][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:26.880][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.881][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:26.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:26.883][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:26.885][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:26.888][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:26.890][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:26.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:26.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:26.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:26.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:26.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.001][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-20 01:17:27.005][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-20 01:17:27.007][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-20 01:17:27.008][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-20 01:17:27.010][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-20 01:17:27.012][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-20 01:17:27.013][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-20 01:17:27.015][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-20 01:17:27.016][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-20 01:17:27.018][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-20 01:17:27.020][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-20 01:17:27.021][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-20 01:17:27.023][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-20 01:17:27.024][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-20 01:17:27.026][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-20 01:17:27.027][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-20 01:17:27.029][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-20 01:17:27.031][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-20 01:17:27.032][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-20 01:17:27.034][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-20 01:17:27.035][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-20 01:17:27.037][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-20 01:17:27.039][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-20 01:17:27.040][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-20 01:17:27.042][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-20 01:17:27.043][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-20 01:17:27.045][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-20 01:17:27.047][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-20 01:17:27.049][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-20 01:17:27.051][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-20 01:17:27.054][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-20 01:17:27.056][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-20 01:17:27.058][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-20 01:17:27.059][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-20 01:17:27.061][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-20 01:17:27.062][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-20 01:17:27.064][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-20 01:17:27.066][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-20 01:17:27.067][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-20 01:17:27.069][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-20 01:17:27.070][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-20 01:17:27.072][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-20 01:17:27.074][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-20 01:17:27.075][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-20 01:17:27.077][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-20 01:17:27.078][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-20 01:17:27.080][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-20 01:17:27.081][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-20 01:17:27.083][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-20 01:17:27.085][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-20 01:17:27.086][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-20 01:17:27.088][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-20 01:17:27.089][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-20 01:17:27.091][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-20 01:17:27.092][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-20 01:17:27.094][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-20 01:17:27.095][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-20 01:17:27.097][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-20 01:17:27.099][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-20 01:17:27.100][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-20 01:17:27.102][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-20 01:17:27.104][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-20 01:17:27.105][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-20 01:17:27.107][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-20 01:17:27.108][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-20 01:17:27.110][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-20 01:17:27.111][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-20 01:17:27.113][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-20 01:17:27.115][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-20 01:17:27.116][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-20 01:17:27.118][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-20 01:17:27.119][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-20 01:17:27.121][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-20 01:17:27.122][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-20 01:17:27.124][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-20 01:17:27.125][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-20 01:17:27.127][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-20 01:17:27.129][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-20 01:17:27.130][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-20 01:17:27.132][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-20 01:17:27.133][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-20 01:17:27.135][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-20 01:17:27.137][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-20 01:17:27.324][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-20 01:17:27.327][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-20 01:17:27.330][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:27.332][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.334][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:27.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:27.523][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-20 01:17:27.534][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:27.537][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:27.538][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-20 01:17:27.540][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:27.541][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:27.543][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:27.544][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-20 01:17:27.545][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:27.546][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:27.548][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-20 01:17:27.549][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:27.550][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:27.551][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-20 01:17:27.553][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-20 01:17:27.554][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-20 01:17:27.555][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:27.557][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:27.557][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-20 01:17:27.557][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-20 01:17:27.559][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-20 01:17:27.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:27.561][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:27.563][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:27.564][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:27.565][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:27.567][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:27.568][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-20 01:17:27.568][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-20 01:17:27.569][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:27.570][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:27.572][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:27.573][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:27.581][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-20 01:17:27.583][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-20 01:17:27.585][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-20 01:17:27.587][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-20 01:17:27.589][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-20 01:17:27.613][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:27.615][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-20 01:17:27.626][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:27.631][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:27.636][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:27.638][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:27.640][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-20 01:17:27.641][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-20 01:17:27.643][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-20 01:17:27.643][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-20 01:17:27.645][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:27.646][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:27.647][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-20 01:17:27.649][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-20 01:17:27.650][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:27.667][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:27.669][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:27.670][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:27.672][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:27.674][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:27.675][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-20 01:17:27.686][biodb::testThat]
biodb.INFO [2024-06-20 01:17:27.688][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-20 01:17:27.690][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:27.692][biodb::testThat]
biodb.TRACE[2024-06-20 01:17:27.720][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-06-20 01:17:27.722][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:27.726][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:27.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:27.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:27.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:27.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:27.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:27.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:27.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:27.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:27.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:27.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:27.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.809][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:27.810][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:27.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:27.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.845][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:27.846][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:27.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.851][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.856][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:27.858][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:27.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:27.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:27.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:27.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:27.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:27.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:27.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.888][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:27.890][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:27.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:27.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:27.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:27.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:27.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:27.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.923][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:27.924][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:27.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:27.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.936][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:27.937][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:27.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:27.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:27.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:27.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:27.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:27.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:27.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:27.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:27.973][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:27.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:27.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:27.987][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:27.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.991][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:27.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.000][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.011][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:28.013][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:28.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.019][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:28.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:28.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:28.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.041][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:28.043][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.047][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:28.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:28.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:28.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:28.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:28.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:28.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:28.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:28.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:28.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:28.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:28.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:28.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:28.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.266][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:28.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:28.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.271][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:28.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:28.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:28.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:28.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:28.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:28.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:28.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:28.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:28.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:28.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:28.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:28.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:28.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:28.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:28.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:28.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:28.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:28.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:28.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:28.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:28.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.387][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.423][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.430][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:28.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:28.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:28.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:28.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:28.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.452][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:28.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.476][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.545][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.552][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:28.600][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-20 01:17:28.605][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-20 01:17:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-20 01:17:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-20 01:17:28.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-20 01:17:28.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-20 01:17:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-20 01:17:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-20 01:17:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-20 01:17:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.759][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.766][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.822][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:28.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:28.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.849][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.859][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.860][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.901][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.903][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:28.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.035][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.036][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:29.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:29.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.081][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:29.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:29.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:29.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:29.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.113][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:29.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.119][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:29.120][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:29.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.125][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:29.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:29.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:29.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:29.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:29.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.166][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:29.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:29.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:29.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.196][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.201][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.202][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.206][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.254][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.255][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.297][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.299][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.345][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.346][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.381][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.382][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:29.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:29.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:29.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:29.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:29.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:29.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:29.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:29.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:29.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:29.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.531][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.557][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.568][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.569][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.595][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:29.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:29.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.618][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.619][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:29.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.653][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.654][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:29.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.657][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:29.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:29.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.686][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:29.688][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:29.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.706][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.707][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:29.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.718][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.719][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:29.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.729][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.731][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:29.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.756][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:29.758][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:29.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.779][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:29.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:29.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:29.801][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:29.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:29.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.839][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:29.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:29.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.865][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:29.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:29.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:29.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:29.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.917][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:29.918][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:29.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:29.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:29.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:29.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:29.949][ef$get] fields variable is a list.
biodb.INFO [2024-06-20 01:17:29.967][biodb::testThat]
biodb.INFO [2024-06-20 01:17:29.969][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-20 01:17:29.970][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:29.971][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:29.985][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-20 01:17:29.992][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-20 01:17:30.221][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:30.223][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-20 01:17:30.226][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-20 01:17:30.228][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-20 01:17:30.242][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-20 01:17:30.244][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-20 01:17:30.272][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:30.274][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:30.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:30.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:30.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:30.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:30.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:30.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:30.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:30.307][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:30.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:30.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.324][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:30.327][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:30.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.341][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.343][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.347][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.357][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.360][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.376][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.391][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.393][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.410][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:30.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:30.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.441][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.443][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.457][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.459][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.470][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:30.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:30.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:30.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:30.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:30.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.507][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.519][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:30.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:30.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:30.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.538][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:30.540][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:30.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.544][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:30.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.555][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:30.557][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:30.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:30.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:30.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.569][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:30.570][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.574][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:30.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:30.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.610][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.615][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:30.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:30.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:30.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:30.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:30.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:30.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:30.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:30.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:30.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:30.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.945][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:30.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:30.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:30.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:30.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:30.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:30.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.022][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:31.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:31.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:31.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.063][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:31.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.102][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:31.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:31.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.107][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:31.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.157][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-20 01:17:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-20 01:17:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-20 01:17:31.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-20 01:17:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-20 01:17:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-20 01:17:31.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-20 01:17:31.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-20 01:17:31.201][biodb::testThat]
biodb.INFO [2024-06-20 01:17:31.202][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-20 01:17:31.203][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:31.204][biodb::testThat]
biodb.TRACE[2024-06-20 01:17:31.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.210][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.212][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.214][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-06-20 01:17:31.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.294][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-06-20 01:17:31.296][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-20 01:17:31.297][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-20 01:17:31.298][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-20 01:17:31.301][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.304][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.306][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:31.309][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.311][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:31.314][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:31.316][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:31.318][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:31.320][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:31.322][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:31.324][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-20 01:17:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.358][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:31.360][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:31.362][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-20 01:17:31.394][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.396][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.398][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.400][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-06-20 01:17:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.426][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.440][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-06-20 01:17:31.507][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-20 01:17:31.510][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-20 01:17:31.512][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-20 01:17:31.535][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.538][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.541][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:31.544][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.546][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:31.570][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:31.573][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:31.575][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:31.577][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:31.579][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:31.581][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-20 01:17:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:31.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.618][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:31.620][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:31.622][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-20 01:17:31.654][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.656][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.659][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.662][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-06-20 01:17:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.711][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-06-20 01:17:31.713][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-06-20 01:17:31.714][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-20 01:17:31.715][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-20 01:17:31.718][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.727][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.731][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:31.734][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.735][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:31.737][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:31.739][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:31.740][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:31.742][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:31.743][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:31.745][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-20 01:17:31.747][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.760][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.770][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:31.772][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:31.773][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-06-20 01:17:31.823][biodb::testThat]
biodb.INFO [2024-06-20 01:17:31.824][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-20 01:17:31.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:31.827][biodb::testThat]
biodb.TRACE[2024-06-20 01:17:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.893][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-20 01:17:31.894][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-20 01:17:31.896][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-20 01:17:31.898][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.900][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.902][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:31.905][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:31.907][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:31.909][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:31.911][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:31.913][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:31.914][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:31.916][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:31.918][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-20 01:17:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:31.942][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:31.943][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-06-20 01:17:32.000][biodb::testThat]
biodb.INFO [2024-06-20 01:17:32.002][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-20 01:17:32.004][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:32.006][biodb::testThat]
biodb.TRACE[2024-06-20 01:17:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-20 01:17:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-20 01:17:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.065][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-20 01:17:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-20 01:17:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-20 01:17:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-20 01:17:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-20 01:17:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-20 01:17:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-20 01:17:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-20 01:17:32.146][biodb::testThat]
biodb.INFO [2024-06-20 01:17:32.147][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-20 01:17:32.150][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:32.152][biodb::testThat]
biodb.INFO [2024-06-20 01:17:32.171][biodb::testThat]
biodb.INFO [2024-06-20 01:17:32.173][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-20 01:17:32.175][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:32.176][biodb::testThat]
biodb.INFO [2024-06-20 01:17:32.197][biodb::testThat]
biodb.INFO [2024-06-20 01:17:32.198][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-20 01:17:32.200][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:32.201][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:32.214][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-06-20 01:17:33.501][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-06-20 01:17:38.009][biodb::testThat]
biodb.INFO [2024-06-20 01:17:38.011][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-20 01:17:38.012][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:38.013][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:38.171][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-06-20 01:17:38.650][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:38.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:38.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.656][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:38.657][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:38.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.661][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:38.662][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:38.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.665][ef$get] fields variable is a list.
biodb.INFO [2024-06-20 01:17:38.667][biodb::testThat]
biodb.INFO [2024-06-20 01:17:38.668][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-06-20 01:17:38.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:38.670][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:38.673][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-06-20 01:17:38.714][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-20 01:17:38.716][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:38.718][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-20 01:17:38.762][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-06-20 01:17:38.764][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-20 01:17:38.766][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-20 01:17:38.767][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-20 01:17:38.769][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:38.771][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:38.772][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:38.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:38.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:38.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:38.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:38.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:38.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:38.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.803][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:38.842][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-20 01:17:38.843][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-06-20 01:17:38.893][biodb::testThat]
biodb.INFO [2024-06-20 01:17:38.894][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-06-20 01:17:38.896][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:38.897][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:38.907][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-06-20 01:17:38.909][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-06-20 01:17:38.910][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-20 01:17:38.912][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:38.914][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-20 01:17:38.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-06-20 01:17:38.918][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-20 01:17:38.919][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-20 01:17:38.921][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-20 01:17:38.923][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:38.924][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:38.926][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:38.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:38.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:38.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:38.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:38.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:38.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:38.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:38.959][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:38.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:38.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:38.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:39.000][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-20 01:17:39.001][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-06-20 01:17:39.002][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-06-20 01:17:39.063][biodb::testThat]
biodb.INFO [2024-06-20 01:17:39.065][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-06-20 01:17:39.066][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:39.067][biodb::testThat]
biodb.INFO [2024-06-20 01:17:39.101][biodb::testThat]
biodb.INFO [2024-06-20 01:17:39.103][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-06-20 01:17:39.104][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:39.105][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:39.108][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:39.110][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:39.112][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:39.114][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:39.115][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:39.117][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:39.118][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:39.119][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:39.120][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-06-20 01:17:39.201][biodb::testThat]
biodb.INFO [2024-06-20 01:17:39.202][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-06-20 01:17:39.203][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:39.205][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:39.208][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:39.210][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:39.212][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:39.214][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:39.215][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:39.217][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:39.223][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:39.225][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:39.226][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-06-20 01:17:39.246][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:39.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:39.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:39.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:39.251][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:39.252][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:39.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:39.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:39.256][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:39.257][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:39.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:39.259][ef$get] fields variable is a list.
biodb.INFO [2024-06-20 01:17:39.261][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-20 01:17:39.262][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-20 01:17:39.272][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-20 01:17:39.273][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-20 01:17:39.275][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.277][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.279][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-20 01:17:39.286][biodb::testContext]
biodb.INFO [2024-06-20 01:17:39.288][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:39.289][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-06-20 01:17:39.290][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:39.292][biodb::testContext]
biodb.INFO [2024-06-20 01:17:39.300][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-20 01:17:39.304][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-20 01:17:39.309][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:39.311][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-20 01:17:39.312][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-20 01:17:39.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.317][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-20 01:17:39.318][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-20 01:17:39.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.323][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-20 01:17:39.324][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-20 01:17:39.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.329][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-20 01:17:39.330][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-20 01:17:39.331][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-20 01:17:39.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.336][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-20 01:17:39.337][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-20 01:17:39.338][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-20 01:17:39.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.343][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-20 01:17:39.344][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-20 01:17:39.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.349][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-20 01:17:39.350][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-20 01:17:39.351][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-20 01:17:39.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.356][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-20 01:17:39.357][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-20 01:17:39.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.362][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-20 01:17:39.363][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-20 01:17:39.364][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-20 01:17:39.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.369][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-20 01:17:39.370][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-20 01:17:39.371][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-20 01:17:39.373][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-20 01:17:39.379][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-20 01:17:39.381][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-20 01:17:39.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.386][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-20 01:17:39.388][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-20 01:17:39.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.392][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-20 01:17:39.393][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-20 01:17:39.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.398][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-20 01:17:39.399][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-20 01:17:39.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.404][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-20 01:17:39.405][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-20 01:17:39.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.410][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-20 01:17:39.411][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-20 01:17:39.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.416][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-20 01:17:39.417][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-20 01:17:39.421][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-20 01:17:39.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.426][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-20 01:17:39.427][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-20 01:17:39.429][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-20 01:17:39.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.435][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-20 01:17:39.438][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.439][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-20 01:17:39.440][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.442][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:39.443][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.444][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.446][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.447][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.448][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-20 01:17:39.450][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:39.451][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.452][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-20 01:17:39.453][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:39.454][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.456][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.457][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:39.457][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-20 01:17:39.457][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-20 01:17:39.457][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-20 01:17:39.457][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-20 01:17:39.459][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:39.461][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.463][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.465][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:39.467][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.468][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.470][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.471][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.473][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:39.474][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:39.475][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.476][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.478][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-20 01:17:39.480][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.481][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-20 01:17:39.482][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.484][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:39.485][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.486][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.488][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.490][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.493][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-20 01:17:39.496][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:39.498][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.500][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-20 01:17:39.502][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:39.504][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.506][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.507][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:39.507][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-20 01:17:39.507][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-20 01:17:39.507][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-20 01:17:39.507][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-20 01:17:39.509][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:39.511][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.514][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:39.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.519][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.521][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.523][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:39.525][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:39.527][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.529][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.531][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-20 01:17:39.535][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.537][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-20 01:17:39.547][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.549][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:39.551][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.553][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.555][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.557][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.559][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-20 01:17:39.561][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:39.563][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.565][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-20 01:17:39.567][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:39.569][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.571][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.573][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.575][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:39.577][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.581][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:39.583][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.585][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.587][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.589][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.591][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:39.592][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:39.594][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.595][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.597][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-20 01:17:39.599][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.600][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-20 01:17:39.601][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.603][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:39.604][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.605][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.606][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.607][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.609][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-20 01:17:39.610][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:39.611][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.613][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-20 01:17:39.614][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:39.615][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.616][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:39.617][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.619][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:39.620][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.621][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.622][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:39.623][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:39.625][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:39.626][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:39.627][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.628][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:39.629][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:39.631][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:39.632][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:39.633][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:39.635][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.741][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-20 01:17:39.743][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-20 01:17:39.744][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-20 01:17:39.746][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-20 01:17:39.748][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-20 01:17:39.750][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-20 01:17:39.751][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-20 01:17:39.753][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-20 01:17:39.755][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-20 01:17:39.756][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-20 01:17:39.758][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-20 01:17:39.759][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-20 01:17:39.761][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-20 01:17:39.763][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-20 01:17:39.764][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-20 01:17:39.766][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-20 01:17:39.768][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-20 01:17:39.769][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-20 01:17:39.771][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-20 01:17:39.772][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-20 01:17:39.774][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-20 01:17:39.776][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-20 01:17:39.777][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-20 01:17:39.779][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-20 01:17:39.780][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-20 01:17:39.782][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-20 01:17:39.784][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-20 01:17:39.785][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-20 01:17:39.787][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-20 01:17:39.789][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-20 01:17:39.790][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-20 01:17:39.792][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-20 01:17:39.793][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-20 01:17:39.795][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-20 01:17:39.796][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-20 01:17:39.798][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-20 01:17:39.800][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-20 01:17:39.801][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-20 01:17:39.803][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-20 01:17:39.806][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-20 01:17:39.807][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-20 01:17:39.809][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-20 01:17:39.810][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-20 01:17:39.812][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-20 01:17:39.814][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-20 01:17:39.816][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-20 01:17:39.817][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-20 01:17:39.819][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-20 01:17:39.826][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-20 01:17:39.828][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-20 01:17:39.830][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-20 01:17:39.831][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-20 01:17:39.833][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-20 01:17:39.835][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-20 01:17:39.837][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-20 01:17:39.838][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-20 01:17:39.840][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-20 01:17:39.841][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-20 01:17:39.843][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-20 01:17:39.845][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-20 01:17:39.846][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-20 01:17:39.848][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-20 01:17:39.850][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-20 01:17:39.852][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-20 01:17:39.853][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-20 01:17:39.855][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-20 01:17:39.857][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-20 01:17:39.858][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-20 01:17:39.860][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-20 01:17:39.861][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-20 01:17:39.863][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-20 01:17:39.865][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-20 01:17:39.866][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-20 01:17:39.868][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-20 01:17:39.871][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-20 01:17:39.873][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-20 01:17:39.875][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-20 01:17:39.877][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-20 01:17:39.879][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-20 01:17:39.881][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-20 01:17:39.882][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-20 01:17:39.884][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-20 01:17:39.885][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-20 01:17:39.887][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-20 01:17:39.890][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-20 01:17:39.891][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:39.892][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.894][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.947][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:39.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:39.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:39.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:39.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:39.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:39.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:39.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.049][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-20 01:17:40.051][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:40.054][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:40.055][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-20 01:17:40.059][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:40.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:40.062][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:40.063][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-20 01:17:40.065][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:40.066][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:40.067][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-20 01:17:40.068][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:40.070][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:40.071][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-20 01:17:40.072][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-20 01:17:40.074][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-20 01:17:40.075][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:40.077][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:40.077][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-20 01:17:40.077][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-20 01:17:40.078][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-20 01:17:40.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:40.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:40.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:40.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:40.084][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:40.085][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:40.088][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-20 01:17:40.088][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-20 01:17:40.089][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:40.090][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:40.091][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:40.093][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:40.094][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-20 01:17:40.096][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-20 01:17:40.098][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-20 01:17:40.100][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-20 01:17:40.109][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-20 01:17:40.115][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:40.117][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-20 01:17:40.118][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:40.130][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:40.132][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:40.133][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:40.135][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-20 01:17:40.136][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-20 01:17:40.138][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-20 01:17:40.138][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-20 01:17:40.139][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:40.140][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:40.141][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-20 01:17:40.142][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-20 01:17:40.144][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:40.146][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:40.147][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:40.148][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:40.150][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:40.152][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:40.153][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-20 01:17:40.156][biodb::testThat]
biodb.INFO [2024-06-20 01:17:40.157][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-06-20 01:17:40.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:40.159][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:40.165][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:40.167][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:40.169][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:40.171][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:40.172][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:40.174][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:40.175][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:40.176][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:40.178][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:40.181][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-06-20 01:17:40.191][biodb::testThat]
biodb.INFO [2024-06-20 01:17:40.193][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-06-20 01:17:40.194][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:40.195][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:40.198][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-20 01:17:40.199][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-20 01:17:40.201][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:40.203][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-20 01:17:40.206][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-20 01:17:40.207][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-20 01:17:40.225][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-20 01:17:40.226][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-20 01:17:40.228][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:40.230][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:40.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:40.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:40.257][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.268][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.269][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.272][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.279][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.280][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.295][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.297][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.301][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.316][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.318][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.350][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.351][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.360][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.361][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.364][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:40.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:40.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:40.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:40.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:40.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:40.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.392][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.393][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.402][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.413][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.423][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:40.425][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:40.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:40.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.439][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:40.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:40.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:40.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.450][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:40.451][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.455][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:40.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.505][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.520][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:40.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:40.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:40.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:40.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:40.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:40.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:40.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.862][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:40.902][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-20 01:17:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:40.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:40.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:40.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-20 01:17:40.933][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-20 01:17:40.935][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-20 01:17:40.936][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-20 01:17:40.937][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-20 01:17:40.939][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:40.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:40.941][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:40.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:40.944][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-20 01:17:40.952][biodb::testContext]
biodb.INFO [2024-06-20 01:17:40.953][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:40.954][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-06-20 01:17:40.955][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-20 01:17:40.956][biodb::testContext]
biodb.INFO [2024-06-20 01:17:40.965][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-20 01:17:40.969][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-20 01:17:40.974][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:40.976][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-20 01:17:40.977][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-20 01:17:40.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.982][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-20 01:17:40.984][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-20 01:17:40.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.989][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-20 01:17:40.990][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-20 01:17:40.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:40.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:40.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:40.995][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-20 01:17:40.996][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-20 01:17:40.998][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-20 01:17:40.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.002][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-20 01:17:41.004][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-20 01:17:41.005][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-20 01:17:41.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.010][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-20 01:17:41.011][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-20 01:17:41.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.016][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-20 01:17:41.018][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-20 01:17:41.019][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-20 01:17:41.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.024][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-20 01:17:41.025][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-20 01:17:41.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.030][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-20 01:17:41.032][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-20 01:17:41.033][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-20 01:17:41.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.045][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-20 01:17:41.046][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-20 01:17:41.048][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-20 01:17:41.049][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-20 01:17:41.050][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-20 01:17:41.052][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-20 01:17:41.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.057][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-20 01:17:41.058][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-20 01:17:41.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.063][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-20 01:17:41.065][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-20 01:17:41.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.071][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-20 01:17:41.073][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-20 01:17:41.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.077][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-20 01:17:41.079][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-20 01:17:41.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.085][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-20 01:17:41.086][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-20 01:17:41.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.091][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-20 01:17:41.092][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-20 01:17:41.096][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-20 01:17:41.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.100][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-20 01:17:41.102][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-20 01:17:41.103][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-20 01:17:41.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.108][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-20 01:17:41.110][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.111][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-20 01:17:41.112][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.114][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:41.115][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.116][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.117][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.118][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.120][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-20 01:17:41.121][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:41.122][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.123][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-20 01:17:41.125][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:41.126][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.127][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.128][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:41.128][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-20 01:17:41.128][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-20 01:17:41.128][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-20 01:17:41.128][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-20 01:17:41.130][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:41.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.135][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:41.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.139][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.141][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.143][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.145][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:41.147][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:41.149][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.151][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.153][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-20 01:17:41.157][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.159][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-20 01:17:41.161][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.163][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:41.165][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.167][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.169][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.171][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.173][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-20 01:17:41.176][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:41.178][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.180][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-20 01:17:41.182][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:41.184][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.186][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.188][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:41.188][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-20 01:17:41.188][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-20 01:17:41.188][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-20 01:17:41.188][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-20 01:17:41.190][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:41.192][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.194][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.196][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:41.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.204][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.206][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.208][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.210][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:41.212][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:41.214][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.216][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.219][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-20 01:17:41.222][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.224][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-20 01:17:41.226][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.228][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:41.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.232][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.234][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.235][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.237][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-20 01:17:41.238][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:41.239][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.240][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-20 01:17:41.242][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:41.243][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.244][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.246][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.247][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:41.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.249][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.250][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:41.252][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.253][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.254][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.255][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.256][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:41.257][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:41.259][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.260][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.261][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-20 01:17:41.263][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.264][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-20 01:17:41.266][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.267][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:41.268][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.269][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.271][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.272][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.274][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-20 01:17:41.275][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:41.276][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.278][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-20 01:17:41.279][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:41.280][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.282][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.283][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.284][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-20 01:17:41.285][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.286][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.287][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:41.289][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.290][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.291][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.292][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.294][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:41.295][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:41.296][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.297][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.299][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:41.300][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.320][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.406][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-20 01:17:41.407][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-20 01:17:41.409][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-20 01:17:41.411][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-20 01:17:41.412][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-20 01:17:41.414][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-20 01:17:41.415][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-20 01:17:41.417][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-20 01:17:41.419][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-20 01:17:41.420][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-20 01:17:41.422][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-20 01:17:41.423][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-20 01:17:41.425][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-20 01:17:41.427][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-20 01:17:41.429][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-20 01:17:41.432][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-20 01:17:41.434][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-20 01:17:41.436][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-20 01:17:41.438][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-20 01:17:41.440][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-20 01:17:41.442][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-20 01:17:41.443][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-20 01:17:41.445][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-20 01:17:41.446][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-20 01:17:41.448][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-20 01:17:41.450][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-20 01:17:41.451][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-20 01:17:41.453][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-20 01:17:41.455][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-20 01:17:41.456][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-20 01:17:41.458][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-20 01:17:41.460][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-20 01:17:41.461][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-20 01:17:41.463][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-20 01:17:41.464][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-20 01:17:41.466][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-20 01:17:41.473][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-20 01:17:41.475][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-20 01:17:41.477][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-20 01:17:41.478][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-20 01:17:41.481][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-20 01:17:41.483][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-20 01:17:41.484][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-20 01:17:41.486][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-20 01:17:41.488][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-20 01:17:41.490][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-20 01:17:41.491][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-20 01:17:41.493][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-20 01:17:41.495][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-20 01:17:41.497][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-20 01:17:41.498][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-20 01:17:41.500][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-20 01:17:41.501][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-20 01:17:41.503][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-20 01:17:41.505][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-20 01:17:41.507][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-20 01:17:41.509][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-20 01:17:41.510][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-20 01:17:41.512][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-20 01:17:41.514][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-20 01:17:41.515][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-20 01:17:41.517][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-20 01:17:41.519][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-20 01:17:41.520][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-20 01:17:41.522][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-20 01:17:41.524][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-20 01:17:41.525][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-20 01:17:41.527][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-20 01:17:41.528][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-20 01:17:41.530][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-20 01:17:41.532][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-20 01:17:41.533][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-20 01:17:41.535][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-20 01:17:41.537][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-20 01:17:41.539][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-20 01:17:41.540][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-20 01:17:41.542][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-20 01:17:41.543][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-20 01:17:41.545][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-20 01:17:41.547][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-20 01:17:41.548][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-20 01:17:41.550][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-20 01:17:41.551][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-20 01:17:41.553][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-20 01:17:41.556][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-20 01:17:41.557][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-20 01:17:41.558][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.560][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-20 01:17:41.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:41.708][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-20 01:17:41.710][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:41.713][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.714][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.715][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.716][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-20 01:17:41.718][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.719][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-20 01:17:41.720][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.721][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.728][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-20 01:17:41.730][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-20 01:17:41.731][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.733][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-20 01:17:41.734][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-20 01:17:41.735][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-20 01:17:41.737][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-20 01:17:41.738][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-20 01:17:41.738][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-20 01:17:41.738][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-20 01:17:41.740][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-20 01:17:41.741][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.742][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.744][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-20 01:17:41.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-20 01:17:41.746][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-20 01:17:41.747][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-20 01:17:41.748][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-20 01:17:41.748][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-20 01:17:41.750][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:41.751][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:41.752][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-20 01:17:41.754][self$setPropertyValue]
biodb.DEBUG[2024-06-20 01:17:41.756][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-20 01:17:41.757][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-20 01:17:41.759][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-20 01:17:41.762][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-20 01:17:41.764][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-20 01:17:41.767][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:41.768][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-20 01:17:41.770][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:41.772][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:41.773][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:41.774][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:41.776][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-20 01:17:41.777][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-20 01:17:41.779][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-20 01:17:41.779][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-20 01:17:41.780][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-20 01:17:41.781][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-20 01:17:41.782][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-20 01:17:41.784][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-20 01:17:41.785][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-20 01:17:41.787][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:41.789][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:41.790][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:41.792][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-20 01:17:41.793][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-20 01:17:41.794][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-20 01:17:41.796][biodb::testThat]
biodb.INFO [2024-06-20 01:17:41.798][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-06-20 01:17:41.799][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-20 01:17:41.800][biodb::testThat]
biodb.DEBUG[2024-06-20 01:17:41.803][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-20 01:17:41.804][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-20 01:17:41.805][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-20 01:17:41.810][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:41.812][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:41.813][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:41.815][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:41.817][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:41.818][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:41.820][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:41.821][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:41.822][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:41.824][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:41.825][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-06-20 01:17:41.827][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-20 01:17:41.828][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-20 01:17:41.830][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:41.832][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-20 01:17:41.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-20 01:17:41.836][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-20 01:17:41.842][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-20 01:17:41.843][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-20 01:17:41.845][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:41.846][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:41.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:41.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:41.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:41.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:41.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:41.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:41.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:41.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:41.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:41.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.898][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:41.900][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:41.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.909][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:41.910][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:41.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.913][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:41.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.919][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:41.921][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:41.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:41.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:41.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.941][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:41.942][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:41.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:41.953][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:41.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:41.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:41.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:41.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:41.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:41.974][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:41.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.983][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:41.984][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:41.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:41.994][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:41.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:41.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:41.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.029][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.061][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.062][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.066][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.071][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.072][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.082][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:42.083][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.087][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:42.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.108][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.291][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.362][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.367][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.432][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:42.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:42.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.464][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:42.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:42.500][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-20 01:17:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.514][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:42.526][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:42.527][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:42.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:42.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:42.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:42.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:42.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:42.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:42.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:42.550][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-20 01:17:42.551][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-20 01:17:42.554][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:42.556][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-20 01:17:42.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-20 01:17:42.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-20 01:17:42.563][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-20 01:17:42.564][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-20 01:17:42.566][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-20 01:17:42.568][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-20 01:17:42.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:42.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:42.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:42.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:42.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:42.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:42.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:42.593][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.611][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.612][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.622][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.623][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.626][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.633][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.634][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.647][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.654][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.655][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:42.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.685][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.687][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.696][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.697][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.707][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.708][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.710][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.728][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.729][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.731][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.744][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.755][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.759][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.766][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.767][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.776][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.777][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.787][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:42.788][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-20 01:17:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:42.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-20 01:17:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.835][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.841][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-20 01:17:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-20 01:17:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-20 01:17:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-20 01:17:42.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-20 01:17:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-20 01:17:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-20 01:17:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-20 01:17:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-20 01:17:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-20 01:17:42.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:42.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.007][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:43.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-20 01:17:43.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:43.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:43.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:43.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-20 01:17:43.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:43.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:43.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:43.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:43.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-20 01:17:43.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.077][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:43.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:43.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:43.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.087][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:43.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-20 01:17:43.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:43.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:43.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:43.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-20 01:17:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-20 01:17:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.108][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-20 01:17:43.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-20 01:17:43.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-20 01:17:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-20 01:17:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:43.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:43.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.181][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:43.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-20 01:17:43.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-20 01:17:43.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-20 01:17:43.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:43.216][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-20 01:17:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.227][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:43.237][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:43.238][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:43.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:43.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:43.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:43.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:43.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:43.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:43.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:43.276][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-20 01:17:43.277][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-20 01:17:43.278][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-20 01:17:43.280][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:43.282][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:43.284][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:43.286][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:43.287][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:43.289][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:43.290][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:43.292][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:43.293][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:43.295][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:43.296][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-20 01:17:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.318][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.328][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:43.341][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:43.342][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:43.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:43.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:43.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:43.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:43.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:43.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:43.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.629][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.634][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.639][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.649][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:43.654][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-20 01:17:43.655][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:43.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:43.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:43.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:43.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:43.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:43.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:43.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-20 01:17:43.695][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-20 01:17:43.697][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-20 01:17:43.699][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-20 01:17:43.702][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:43.704][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:43.706][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-20 01:17:43.708][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-20 01:17:43.709][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-20 01:17:43.712][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-20 01:17:43.713][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-20 01:17:43.714][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-20 01:17:43.716][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-20 01:17:43.717][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-20 01:17:43.718][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-20 01:17:43.720][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.737][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.742][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:43.764][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-20 01:17:43.765][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-06-20 01:17:43.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:43.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:43.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:43.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:43.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:43.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:43.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-20 01:17:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.814][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-20 01:17:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-20 01:17:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-20 01:17:43.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-20 01:17:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-20 01:17:43.824][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-20 01:17:43.825][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-20 01:17:43.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-20 01:17:43.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:43.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:43.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:43.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:43.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:43.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-20 01:17:43.876][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-20 01:17:43.878][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-20 01:17:43.879][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-20 01:17:43.880][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-20 01:17:43.881][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-20 01:17:43.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-20 01:17:43.884][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-20 01:17:43.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-20 01:17:43.886][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-20 01:17:43.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  11.12    0.89   21.31

Example timings