Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-06-14 14:38 -0400 (Fri, 14 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4757
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 202/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-06-12 14:00 -0400 (Wed, 12 Jun 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_19
git_last_commit: a7f41b2
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on palomino3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.10.0
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
StartedAt: 2024-06-13 01:01:40 -0400 (Thu, 13 Jun 2024)
EndedAt: 2024-06-13 01:04:03 -0400 (Thu, 13 Jun 2024)
EllapsedTime: 142.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-06-13 01:03:28.496][biodb::testContext]
biodb.INFO [2024-06-13 01:03:28.500][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:28.501][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-06-13 01:03:28.503][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:28.504][biodb::testContext]
biodb.INFO [2024-06-13 01:03:28.506][biodb::testThat]
biodb.INFO [2024-06-13 01:03:28.507][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-06-13 01:03:28.508][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:28.509][biodb::testThat]
biodb.INFO [2024-06-13 01:03:29.326][biodb::testContext]
biodb.INFO [2024-06-13 01:03:29.327][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:29.329][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-06-13 01:03:29.332][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:29.334][biodb::testContext]
biodb.INFO [2024-06-13 01:03:29.757][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-13 01:03:29.868][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-13 01:03:30.539][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:30.540][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-13 01:03:30.542][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-13 01:03:30.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.547][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-13 01:03:30.564][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-13 01:03:30.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.569][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-13 01:03:30.570][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-13 01:03:30.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.575][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-13 01:03:30.577][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-13 01:03:30.579][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-13 01:03:30.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.584][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-13 01:03:30.585][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-13 01:03:30.586][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-13 01:03:30.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.591][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-13 01:03:30.592][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-13 01:03:30.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.597][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-13 01:03:30.598][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-13 01:03:30.599][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-13 01:03:30.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.604][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-13 01:03:30.605][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-13 01:03:30.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.610][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-13 01:03:30.611][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-13 01:03:30.613][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-13 01:03:30.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.618][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-13 01:03:30.619][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-13 01:03:30.621][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-13 01:03:30.622][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-13 01:03:30.623][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-13 01:03:30.624][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-13 01:03:30.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.629][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-13 01:03:30.631][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-13 01:03:30.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.635][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-13 01:03:30.637][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-13 01:03:30.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.641][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-13 01:03:30.643][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-13 01:03:30.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.647][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-13 01:03:30.649][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-13 01:03:30.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.653][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-13 01:03:30.655][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-13 01:03:30.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.660][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-13 01:03:30.661][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-13 01:03:30.665][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-13 01:03:30.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.669][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-13 01:03:30.671][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-13 01:03:30.672][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-13 01:03:30.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.679][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-13 01:03:30.708][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.723][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-13 01:03:30.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.732][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:30.734][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.736][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.738][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.739][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-13 01:03:30.740][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:30.742][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.743][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-13 01:03:30.744][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:30.745][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.746][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.748][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:30.748][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-13 01:03:30.748][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-13 01:03:30.748][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-13 01:03:30.748][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-13 01:03:30.749][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:30.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.755][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:30.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.759][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.760][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.762][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.764][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:30.766][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:30.768][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.769][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.771][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-13 01:03:30.774][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.776][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-13 01:03:30.778][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.780][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:30.782][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.784][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.786][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.788][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.790][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-13 01:03:30.793][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:30.795][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.796][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-13 01:03:30.797][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:30.799][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.801][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.802][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:30.802][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-13 01:03:30.802][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-13 01:03:30.802][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-13 01:03:30.802][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-13 01:03:30.804][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:30.805][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.806][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.807][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:30.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.810][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.811][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.812][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.814][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:30.815][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:30.816][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.817][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.819][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-13 01:03:30.821][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.822][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-13 01:03:30.824][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.825][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:30.826][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.827][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.829][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.830][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.831][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-13 01:03:30.832][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:30.834][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.835][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-13 01:03:30.836][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:30.837][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.838][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.840][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.841][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:30.842][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.843][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.844][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:30.846][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.847][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.848][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.849][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.851][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:30.852][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:30.853][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.854][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.856][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-13 01:03:30.858][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.859][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-13 01:03:30.861][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.862][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:30.863][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.865][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.867][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.868][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-13 01:03:30.869][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:30.871][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.872][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-13 01:03:30.873][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:30.874][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.876][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:30.877][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.878][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:30.879][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.880][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.882][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:30.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:30.885][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:30.886][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:30.887][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.889][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:30.890][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:30.891][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:30.892][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:30.896][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:30.897][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:30.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:30.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:30.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:30.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:30.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.001][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-13 01:03:31.006][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-13 01:03:31.008][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-13 01:03:31.009][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-13 01:03:31.011][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-13 01:03:31.013][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-13 01:03:31.014][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-13 01:03:31.016][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-13 01:03:31.018][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-13 01:03:31.019][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-13 01:03:31.021][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-13 01:03:31.022][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-13 01:03:31.024][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-13 01:03:31.025][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-13 01:03:31.029][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-13 01:03:31.030][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-13 01:03:31.032][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-13 01:03:31.033][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-13 01:03:31.035][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-13 01:03:31.037][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-13 01:03:31.038][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-13 01:03:31.040][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-13 01:03:31.041][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-13 01:03:31.043][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-13 01:03:31.045][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-13 01:03:31.046][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-13 01:03:31.048][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-13 01:03:31.049][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-13 01:03:31.051][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-13 01:03:31.053][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-13 01:03:31.054][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-13 01:03:31.056][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-13 01:03:31.058][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-13 01:03:31.059][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-13 01:03:31.061][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-13 01:03:31.062][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-13 01:03:31.064][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-13 01:03:31.066][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-13 01:03:31.067][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-13 01:03:31.069][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-13 01:03:31.070][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-13 01:03:31.072][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-13 01:03:31.074][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-13 01:03:31.075][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-13 01:03:31.077][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-13 01:03:31.079][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-13 01:03:31.080][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-13 01:03:31.082][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-13 01:03:31.083][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-13 01:03:31.085][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-13 01:03:31.087][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-13 01:03:31.089][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-13 01:03:31.090][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-13 01:03:31.092][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-13 01:03:31.094][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-13 01:03:31.095][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-13 01:03:31.097][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-13 01:03:31.098][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-13 01:03:31.100][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-13 01:03:31.102][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-13 01:03:31.105][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-13 01:03:31.107][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-13 01:03:31.110][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-13 01:03:31.112][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-13 01:03:31.115][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-13 01:03:31.117][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-13 01:03:31.120][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-13 01:03:31.123][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-13 01:03:31.125][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-13 01:03:31.128][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-13 01:03:31.130][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-13 01:03:31.133][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-13 01:03:31.136][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-13 01:03:31.138][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-13 01:03:31.141][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-13 01:03:31.143][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-13 01:03:31.146][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-13 01:03:31.149][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-13 01:03:31.151][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-13 01:03:31.154][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-13 01:03:31.157][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-13 01:03:31.159][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-13 01:03:31.162][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-13 01:03:31.210][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-13 01:03:31.213][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-13 01:03:31.216][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:31.217][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.220][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:31.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:31.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:31.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:31.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:31.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:31.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:31.960][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-13 01:03:31.993][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:31.995][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:31.997][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-13 01:03:31.998][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:32.000][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:32.001][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:32.003][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-13 01:03:32.004][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:32.005][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:32.007][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-13 01:03:32.008][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:32.010][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:32.011][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-13 01:03:32.012][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-13 01:03:32.014][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-13 01:03:32.015][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:32.017][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:32.017][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-13 01:03:32.017][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-13 01:03:32.018][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-13 01:03:32.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:32.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:32.022][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:32.024][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:32.025][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:32.026][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:32.027][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-13 01:03:32.027][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-13 01:03:32.028][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:32.030][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:32.031][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:32.032][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:32.038][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-13 01:03:32.040][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-13 01:03:32.042][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-13 01:03:32.044][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-13 01:03:32.046][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-13 01:03:32.076][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:32.078][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-13 01:03:32.091][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:32.096][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:32.101][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:32.102][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:32.105][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-13 01:03:32.107][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-13 01:03:32.109][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-13 01:03:32.109][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-13 01:03:32.110][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:32.111][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:32.112][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-13 01:03:32.113][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-13 01:03:32.115][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:32.143][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:32.145][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:32.147][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:32.149][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:32.151][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:32.152][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-13 01:03:32.162][biodb::testThat]
biodb.INFO [2024-06-13 01:03:32.163][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-13 01:03:32.164][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:32.166][biodb::testThat]
biodb.TRACE[2024-06-13 01:03:32.464][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-06-13 01:03:32.467][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:32.470][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:32.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:32.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:32.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:32.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:32.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:32.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:32.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:35.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.039][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.040][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.072][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.073][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.082][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.084][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.088][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.101][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.111][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.112][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.121][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.141][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.143][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.153][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.162][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:35.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:35.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.171][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:35.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:35.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.176][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.194][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.213][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:35.214][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:35.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.223][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:35.225][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:35.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.234][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:35.235][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:35.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.292][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.297][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:35.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.307][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:35.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:35.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:35.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:35.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:35.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:35.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.459][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.469][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:35.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.517][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:35.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:35.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:35.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:35.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.590][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.636][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:35.714][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-13 01:03:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-13 01:03:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-13 01:03:35.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-13 01:03:35.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-13 01:03:35.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-13 01:03:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-13 01:03:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-13 01:03:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-13 01:03:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:36.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:36.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:36.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:36.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:36.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:36.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:36.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.220][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.230][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.231][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.265][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.266][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:36.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.333][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:36.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:36.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:36.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:36.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.501][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:36.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:36.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:36.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:36.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:36.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:36.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.535][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:36.537][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:36.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.540][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:36.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.570][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:36.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:36.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.636][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.641][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.642][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.646][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:36.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.734][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.736][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.769][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.770][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:36.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:36.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:36.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:36.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:36.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:36.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:36.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.874][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:36.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:36.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.908][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.909][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.942][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.943][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.947][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.961][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:36.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:36.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.972][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.973][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:36.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.982][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.983][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:36.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:36.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.993][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:36.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:36.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.002][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:37.003][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:37.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.012][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:37.013][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:37.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.023][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:37.024][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:37.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.315][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:37.317][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:37.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.331][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:37.333][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:37.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.342][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:37.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:37.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:37.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:37.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:37.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:37.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.377][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.384][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:37.385][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:37.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.395][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:37.396][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:37.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.405][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:37.406][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:37.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.409][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:37.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:37.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.429][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:37.431][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:37.440][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:37.441][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:37.444][ef$get] fields variable is a list.
biodb.INFO [2024-06-13 01:03:37.457][biodb::testThat]
biodb.INFO [2024-06-13 01:03:37.458][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-13 01:03:37.459][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:37.460][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:37.474][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-13 01:03:37.480][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-13 01:03:38.579][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:38.582][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-13 01:03:38.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-13 01:03:38.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-13 01:03:38.603][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-13 01:03:38.605][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-13 01:03:38.634][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:38.638][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:38.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:38.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:38.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:38.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:38.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:38.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:38.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:38.658][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:38.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:38.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.662][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:38.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.669][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:38.670][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:38.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.674][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.681][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.683][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.687][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.693][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.694][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.698][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.704][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.715][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.716][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.726][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:38.727][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:38.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:38.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:38.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:38.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.748][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.749][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.759][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.760][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:38.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:38.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:38.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:38.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:38.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:38.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.791][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:38.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:38.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:38.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:38.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:38.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:38.819][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:38.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:38.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.828][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:38.830][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:38.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:38.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:38.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.843][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:38.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.850][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:38.852][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:38.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:38.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:38.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.898][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:38.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:38.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:38.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:39.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:39.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:39.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:39.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:39.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:39.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:39.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:39.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:39.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:39.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:39.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:39.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:39.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.196][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.206][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.227][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:39.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:39.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.336][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-13 01:03:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-13 01:03:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-13 01:03:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-13 01:03:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-13 01:03:39.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-13 01:03:39.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-13 01:03:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-13 01:03:39.383][biodb::testThat]
biodb.INFO [2024-06-13 01:03:39.385][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-13 01:03:39.386][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:39.387][biodb::testThat]
biodb.TRACE[2024-06-13 01:03:39.391][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.395][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.397][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-06-13 01:03:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.515][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-06-13 01:03:39.518][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-13 01:03:39.520][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-13 01:03:39.522][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-13 01:03:39.525][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:39.528][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:39.531][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:39.533][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:39.534][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:39.536][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:39.537][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:39.539][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:39.540][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:39.541][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:39.543][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-13 01:03:39.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.566][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:39.567][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:39.568][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-13 01:03:39.631][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.633][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.635][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.637][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-06-13 01:03:39.753][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.771][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-06-13 01:03:39.824][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-13 01:03:39.825][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-13 01:03:39.827][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-13 01:03:39.840][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:39.842][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:39.844][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:39.846][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:39.847][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:39.864][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:39.866][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:39.868][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:39.871][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:39.873][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:39.875][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-13 01:03:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:39.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.899][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:39.900][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:39.901][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-13 01:03:39.946][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.948][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:39.951][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:39.953][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-06-13 01:03:39.997][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:39.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:40.015][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-06-13 01:03:40.017][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-06-13 01:03:40.018][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-13 01:03:40.019][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-13 01:03:40.022][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:40.028][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:40.031][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:40.032][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:40.034][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:40.035][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:40.037][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:40.038][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:40.039][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:40.041][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:40.042][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-13 01:03:40.044][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.061][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:40.066][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:40.067][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:40.068][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-06-13 01:03:40.137][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.138][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-13 01:03:40.140][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:40.141][biodb::testThat]
biodb.TRACE[2024-06-13 01:03:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:40.199][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-13 01:03:40.201][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-13 01:03:40.202][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-13 01:03:40.204][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:40.206][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:40.209][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:40.211][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:40.212][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:40.215][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:40.217][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:40.219][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:40.221][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:40.223][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:40.224][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-13 01:03:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:40.247][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:40.248][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-06-13 01:03:40.566][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.567][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-13 01:03:40.568][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:40.570][biodb::testThat]
biodb.TRACE[2024-06-13 01:03:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-13 01:03:40.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-13 01:03:40.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-13 01:03:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-13 01:03:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-13 01:03:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-13 01:03:40.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-13 01:03:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-13 01:03:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-13 01:03:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-13 01:03:40.701][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.702][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-13 01:03:40.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:40.704][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.724][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.726][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-13 01:03:40.727][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:40.728][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.758][biodb::testThat]
biodb.INFO [2024-06-13 01:03:40.759][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-13 01:03:40.761][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:40.762][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:40.772][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-06-13 01:03:42.637][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-06-13 01:03:43.870][biodb::testThat]
biodb.INFO [2024-06-13 01:03:43.871][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-13 01:03:43.872][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:43.874][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:44.013][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-06-13 01:03:44.260][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:44.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:44.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.265][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:44.266][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:44.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.270][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:44.271][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:44.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.274][ef$get] fields variable is a list.
biodb.INFO [2024-06-13 01:03:44.276][biodb::testThat]
biodb.INFO [2024-06-13 01:03:44.277][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-06-13 01:03:44.279][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:44.280][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:44.282][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-06-13 01:03:44.327][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-13 01:03:44.331][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:44.334][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-13 01:03:44.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-06-13 01:03:44.428][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-13 01:03:44.430][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-13 01:03:44.431][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-13 01:03:44.433][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:44.435][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:44.436][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:44.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:44.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:44.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:44.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:44.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:44.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:44.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.474][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:44.510][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-13 01:03:44.511][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-06-13 01:03:44.558][biodb::testThat]
biodb.INFO [2024-06-13 01:03:44.560][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-06-13 01:03:44.561][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:44.562][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:44.572][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-06-13 01:03:44.574][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-06-13 01:03:44.575][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-13 01:03:44.578][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:44.580][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-13 01:03:44.583][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-06-13 01:03:44.585][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-13 01:03:44.586][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-13 01:03:44.587][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-13 01:03:44.589][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:44.591][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:44.592][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:44.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:44.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:44.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:44.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:44.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:44.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:44.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:44.657][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-13 01:03:44.659][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-06-13 01:03:44.660][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-06-13 01:03:44.986][biodb::testThat]
biodb.INFO [2024-06-13 01:03:44.988][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-06-13 01:03:44.989][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:44.990][biodb::testThat]
biodb.INFO [2024-06-13 01:03:45.041][biodb::testThat]
biodb.INFO [2024-06-13 01:03:45.042][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-06-13 01:03:45.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:45.045][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:45.048][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:45.050][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:45.053][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:45.055][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:45.057][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:45.058][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:45.060][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:45.061][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:45.062][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-06-13 01:03:45.138][biodb::testThat]
biodb.INFO [2024-06-13 01:03:45.140][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-06-13 01:03:45.141][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:45.142][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:45.146][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:45.148][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:45.150][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:45.151][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:45.153][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:45.155][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:45.156][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:45.163][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:45.164][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-06-13 01:03:45.478][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:45.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:45.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:45.483][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:45.484][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:45.485][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:45.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:45.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:45.489][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:45.490][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:45.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:45.493][ef$get] fields variable is a list.
biodb.INFO [2024-06-13 01:03:45.494][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-13 01:03:45.496][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-13 01:03:45.503][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-13 01:03:45.505][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-13 01:03:45.506][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:45.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:45.508][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.510][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-13 01:03:45.517][biodb::testContext]
biodb.INFO [2024-06-13 01:03:45.518][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:45.519][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-06-13 01:03:45.521][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:45.522][biodb::testContext]
biodb.INFO [2024-06-13 01:03:45.534][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-13 01:03:45.537][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-13 01:03:45.543][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:45.544][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-13 01:03:45.546][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-13 01:03:45.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.551][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-13 01:03:45.552][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-13 01:03:45.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.557][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-13 01:03:45.558][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-13 01:03:45.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.565][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-13 01:03:45.567][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-13 01:03:45.569][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-13 01:03:45.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.576][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-13 01:03:45.578][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-13 01:03:45.581][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-13 01:03:45.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.588][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-13 01:03:45.590][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-13 01:03:45.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.598][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-13 01:03:45.600][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-13 01:03:45.602][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-13 01:03:45.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.610][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-13 01:03:45.612][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-13 01:03:45.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.619][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-13 01:03:45.621][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-13 01:03:45.623][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-13 01:03:45.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.631][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-13 01:03:45.633][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-13 01:03:45.635][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-13 01:03:45.637][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-13 01:03:45.639][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-13 01:03:45.649][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-13 01:03:45.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.658][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-13 01:03:45.660][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-13 01:03:45.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.667][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-13 01:03:45.669][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-13 01:03:45.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.677][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-13 01:03:45.679][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-13 01:03:45.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.686][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-13 01:03:45.688][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-13 01:03:45.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.695][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-13 01:03:45.697][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-13 01:03:45.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.704][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-13 01:03:45.706][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-13 01:03:45.712][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-13 01:03:45.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.720][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-13 01:03:45.722][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-13 01:03:45.724][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-13 01:03:45.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.731][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-13 01:03:45.735][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.737][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-13 01:03:45.739][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.741][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:45.743][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.745][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.747][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.749][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.751][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-13 01:03:45.753][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:45.755][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.757][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-13 01:03:45.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:45.761][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.763][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.765][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:45.765][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-13 01:03:45.765][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-13 01:03:45.765][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-13 01:03:45.765][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-13 01:03:45.767][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:45.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.771][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.773][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:45.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.777][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.779][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.780][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.782][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:45.784][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:45.786][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.788][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.790][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-13 01:03:45.794][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.796][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-13 01:03:45.798][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.800][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:45.802][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.803][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.805][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.807][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.809][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-13 01:03:45.810][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:45.811][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.812][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-13 01:03:45.814][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:45.815][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.816][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.817][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:45.817][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-13 01:03:45.817][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-13 01:03:45.817][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-13 01:03:45.817][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-13 01:03:45.819][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:45.820][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.822][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:45.823][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.825][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.826][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.827][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.829][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:45.830][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:45.831][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.832][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.834][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-13 01:03:45.836][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.837][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-13 01:03:45.838][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.845][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:45.846][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.848][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.849][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.850][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.852][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-13 01:03:45.853][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:45.854][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.855][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-13 01:03:45.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:45.858][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.859][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.861][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.862][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:45.863][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.864][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.866][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:45.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.868][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.870][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.872][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.874][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:45.875][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:45.876][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.878][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.879][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-13 01:03:45.881][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.883][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-13 01:03:45.884][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.886][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:45.888][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.889][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.890][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.891][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.893][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-13 01:03:45.894][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:45.895][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.896][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-13 01:03:45.898][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:45.899][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.901][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:45.902][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.903][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:45.904][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.907][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:45.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:45.909][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:45.910][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:45.911][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.912][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:45.914][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:45.915][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:45.916][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:45.918][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:45.919][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.932][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:45.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:45.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:45.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:45.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:45.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.022][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-13 01:03:46.024][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-13 01:03:46.025][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-13 01:03:46.027][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-13 01:03:46.029][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-13 01:03:46.030][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-13 01:03:46.032][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-13 01:03:46.034][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-13 01:03:46.035][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-13 01:03:46.037][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-13 01:03:46.038][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-13 01:03:46.040][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-13 01:03:46.041][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-13 01:03:46.043][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-13 01:03:46.045][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-13 01:03:46.046][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-13 01:03:46.048][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-13 01:03:46.049][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-13 01:03:46.051][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-13 01:03:46.053][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-13 01:03:46.054][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-13 01:03:46.056][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-13 01:03:46.058][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-13 01:03:46.059][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-13 01:03:46.061][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-13 01:03:46.062][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-13 01:03:46.064][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-13 01:03:46.066][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-13 01:03:46.067][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-13 01:03:46.069][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-13 01:03:46.070][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-13 01:03:46.072][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-13 01:03:46.074][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-13 01:03:46.075][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-13 01:03:46.077][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-13 01:03:46.078][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-13 01:03:46.080][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-13 01:03:46.081][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-13 01:03:46.083][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-13 01:03:46.085][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-13 01:03:46.086][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-13 01:03:46.088][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-13 01:03:46.089][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-13 01:03:46.091][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-13 01:03:46.093][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-13 01:03:46.094][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-13 01:03:46.096][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-13 01:03:46.098][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-13 01:03:46.099][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-13 01:03:46.106][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-13 01:03:46.108][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-13 01:03:46.109][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-13 01:03:46.111][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-13 01:03:46.113][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-13 01:03:46.114][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-13 01:03:46.116][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-13 01:03:46.117][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-13 01:03:46.119][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-13 01:03:46.121][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-13 01:03:46.122][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-13 01:03:46.124][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-13 01:03:46.125][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-13 01:03:46.127][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-13 01:03:46.129][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-13 01:03:46.130][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-13 01:03:46.132][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-13 01:03:46.133][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-13 01:03:46.135][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-13 01:03:46.137][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-13 01:03:46.138][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-13 01:03:46.140][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-13 01:03:46.141][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-13 01:03:46.143][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-13 01:03:46.145][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-13 01:03:46.146][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-13 01:03:46.148][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-13 01:03:46.149][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-13 01:03:46.151][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-13 01:03:46.153][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-13 01:03:46.154][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-13 01:03:46.156][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-13 01:03:46.157][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-13 01:03:46.159][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-13 01:03:46.161][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-13 01:03:46.163][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-13 01:03:46.165][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:46.166][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.168][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:46.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:46.311][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-13 01:03:46.313][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:46.315][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:46.316][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-13 01:03:46.318][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:46.319][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:46.320][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:46.321][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-13 01:03:46.323][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:46.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:46.325][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-13 01:03:46.326][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:46.328][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:46.329][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-13 01:03:46.330][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-13 01:03:46.331][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-13 01:03:46.333][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:46.334][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:46.334][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-13 01:03:46.334][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-13 01:03:46.335][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-13 01:03:46.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:46.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:46.339][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:46.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:46.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:46.342][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:46.343][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-13 01:03:46.343][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-13 01:03:46.345][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:46.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:46.347][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:46.348][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:46.350][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-13 01:03:46.352][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-13 01:03:46.353][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-13 01:03:46.355][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-13 01:03:46.362][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-13 01:03:46.366][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:46.367][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-13 01:03:46.368][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:46.370][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:46.372][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:46.373][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:46.375][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-13 01:03:46.376][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-13 01:03:46.377][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-13 01:03:46.377][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-13 01:03:46.379][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:46.380][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:46.381][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-13 01:03:46.382][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-13 01:03:46.383][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:46.385][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:46.387][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:46.388][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:46.390][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:46.391][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:46.393][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-13 01:03:46.395][biodb::testThat]
biodb.INFO [2024-06-13 01:03:46.396][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-06-13 01:03:46.397][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:46.399][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:46.404][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:46.406][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:46.408][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:46.410][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:46.411][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:46.413][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:46.414][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:46.415][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:46.417][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:46.420][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-06-13 01:03:46.429][biodb::testThat]
biodb.INFO [2024-06-13 01:03:46.430][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-06-13 01:03:46.431][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:46.432][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:46.445][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-13 01:03:46.447][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-13 01:03:46.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:46.451][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-13 01:03:46.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-13 01:03:46.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-13 01:03:46.469][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-13 01:03:46.471][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-13 01:03:46.473][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:46.474][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:46.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:46.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:46.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:46.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:46.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:46.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:46.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:46.493][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:46.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.503][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.505][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.515][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.520][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.522][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.531][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.533][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.537][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.553][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.554][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.568][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.572][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.589][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.590][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.600][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.611][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:46.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.615][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:46.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:46.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:46.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:46.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:46.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:46.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.671][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:46.673][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:46.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.677][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:46.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:46.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:46.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.693][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:46.695][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:46.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.735][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.740][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.745][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:46.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:46.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.832][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:46.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.842][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:46.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:46.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:46.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:46.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:46.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.903][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:46.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:46.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:46.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.968][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:46.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:46.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:47.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:47.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:47.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:47.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.049][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:47.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:47.104][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-13 01:03:47.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-13 01:03:47.148][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-13 01:03:47.151][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-13 01:03:47.153][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-13 01:03:47.154][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-13 01:03:47.156][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.159][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.162][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-13 01:03:47.171][biodb::testContext]
biodb.INFO [2024-06-13 01:03:47.172][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:47.174][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-06-13 01:03:47.175][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-13 01:03:47.176][biodb::testContext]
biodb.INFO [2024-06-13 01:03:47.184][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-13 01:03:47.186][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-13 01:03:47.192][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:47.193][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-13 01:03:47.195][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-13 01:03:47.196][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.199][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-13 01:03:47.200][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-13 01:03:47.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.205][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-13 01:03:47.206][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-13 01:03:47.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.211][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-13 01:03:47.212][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-13 01:03:47.213][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-13 01:03:47.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.218][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-13 01:03:47.219][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-13 01:03:47.220][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-13 01:03:47.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.225][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-13 01:03:47.226][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-13 01:03:47.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.236][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-13 01:03:47.238][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-13 01:03:47.239][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-13 01:03:47.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.243][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-13 01:03:47.245][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-13 01:03:47.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.249][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-13 01:03:47.251][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-13 01:03:47.252][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-13 01:03:47.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.256][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-13 01:03:47.258][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-13 01:03:47.259][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-13 01:03:47.260][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-13 01:03:47.261][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-13 01:03:47.263][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-13 01:03:47.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.267][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-13 01:03:47.269][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-13 01:03:47.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.273][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-13 01:03:47.274][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-13 01:03:47.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.279][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-13 01:03:47.280][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-13 01:03:47.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.285][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-13 01:03:47.286][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-13 01:03:47.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.291][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-13 01:03:47.292][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-13 01:03:47.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.296][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-13 01:03:47.298][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-13 01:03:47.301][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-13 01:03:47.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.306][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-13 01:03:47.307][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-13 01:03:47.308][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-13 01:03:47.309][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.313][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-13 01:03:47.315][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.316][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-13 01:03:47.318][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.319][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:47.320][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.321][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.322][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.325][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-13 01:03:47.326][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:47.327][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.328][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-13 01:03:47.330][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:47.331][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.332][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.333][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:47.333][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-13 01:03:47.333][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-13 01:03:47.333][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-13 01:03:47.333][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-13 01:03:47.335][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:47.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.338][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:47.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.343][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.344][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.345][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:47.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:47.347][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.349][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.350][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-13 01:03:47.352][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.353][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-13 01:03:47.354][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.356][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:47.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.358][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.359][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.366][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.367][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-13 01:03:47.369][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:47.370][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.371][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-13 01:03:47.372][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:47.374][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.375][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.376][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:47.376][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-13 01:03:47.376][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-13 01:03:47.376][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-13 01:03:47.376][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-13 01:03:47.377][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:47.379][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.381][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:47.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.384][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.386][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.387][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:47.388][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:47.389][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.390][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.392][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-13 01:03:47.394][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.395][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-13 01:03:47.396][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.398][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:47.399][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.400][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.402][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.403][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.404][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-13 01:03:47.405][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:47.407][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.408][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-13 01:03:47.409][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:47.411][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.412][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.413][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.414][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:47.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.418][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:47.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.420][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.422][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.423][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.424][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:47.426][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:47.427][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.428][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.430][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-13 01:03:47.432][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.433][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-13 01:03:47.434][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.436][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:47.437][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.438][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.439][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.442][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-13 01:03:47.443][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:47.444][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.446][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-13 01:03:47.447][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:47.448][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.450][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.451][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.452][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-13 01:03:47.454][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.456][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:47.457][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.459][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.460][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.461][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.462][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:47.463][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:47.465][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.466][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.467][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:47.468][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.584][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-13 01:03:47.585][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-13 01:03:47.587][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-13 01:03:47.589][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-13 01:03:47.591][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-13 01:03:47.592][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-13 01:03:47.594][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-13 01:03:47.596][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-13 01:03:47.597][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-13 01:03:47.599][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-13 01:03:47.600][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-13 01:03:47.602][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-13 01:03:47.604][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-13 01:03:47.605][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-13 01:03:47.607][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-13 01:03:47.608][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-13 01:03:47.610][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-13 01:03:47.612][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-13 01:03:47.614][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-13 01:03:47.615][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-13 01:03:47.617][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-13 01:03:47.619][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-13 01:03:47.620][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-13 01:03:47.622][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-13 01:03:47.624][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-13 01:03:47.625][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-13 01:03:47.632][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-13 01:03:47.634][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-13 01:03:47.636][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-13 01:03:47.638][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-13 01:03:47.640][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-13 01:03:47.641][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-13 01:03:47.643][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-13 01:03:47.644][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-13 01:03:47.646][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-13 01:03:47.648][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-13 01:03:47.649][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-13 01:03:47.651][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-13 01:03:47.653][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-13 01:03:47.654][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-13 01:03:47.656][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-13 01:03:47.657][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-13 01:03:47.659][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-13 01:03:47.661][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-13 01:03:47.662][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-13 01:03:47.664][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-13 01:03:47.665][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-13 01:03:47.667][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-13 01:03:47.669][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-13 01:03:47.670][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-13 01:03:47.672][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-13 01:03:47.673][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-13 01:03:47.675][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-13 01:03:47.677][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-13 01:03:47.678][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-13 01:03:47.680][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-13 01:03:47.681][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-13 01:03:47.683][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-13 01:03:47.685][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-13 01:03:47.686][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-13 01:03:47.688][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-13 01:03:47.690][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-13 01:03:47.693][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-13 01:03:47.695][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-13 01:03:47.698][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-13 01:03:47.701][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-13 01:03:47.703][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-13 01:03:47.706][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-13 01:03:47.709][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-13 01:03:47.711][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-13 01:03:47.714][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-13 01:03:47.716][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-13 01:03:47.719][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-13 01:03:47.722][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-13 01:03:47.724][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-13 01:03:47.727][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-13 01:03:47.730][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-13 01:03:47.732][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-13 01:03:47.735][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-13 01:03:47.738][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-13 01:03:47.740][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-13 01:03:47.743][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-13 01:03:47.745][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-13 01:03:47.748][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-13 01:03:47.752][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-13 01:03:47.753][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-13 01:03:47.754][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.756][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-13 01:03:47.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:47.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:47.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:47.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:47.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:47.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:47.916][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-13 01:03:47.918][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:47.920][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.922][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.923][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.924][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-13 01:03:47.925][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.927][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-13 01:03:47.928][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.929][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.930][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-13 01:03:47.932][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-13 01:03:47.933][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.934][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-13 01:03:47.935][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-13 01:03:47.937][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-13 01:03:47.938][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-13 01:03:47.939][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-13 01:03:47.939][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-13 01:03:47.939][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-13 01:03:47.941][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-13 01:03:47.942][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.943][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.944][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-13 01:03:47.945][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-13 01:03:47.947][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-13 01:03:47.948][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-13 01:03:47.949][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-13 01:03:47.949][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-13 01:03:47.950][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:47.951][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:47.953][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-13 01:03:47.954][self$setPropertyValue]
biodb.DEBUG[2024-06-13 01:03:47.955][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-13 01:03:47.957][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-13 01:03:47.960][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-13 01:03:47.962][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-13 01:03:47.963][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-13 01:03:47.967][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:47.968][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-13 01:03:47.970][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:47.972][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:47.973][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:47.975][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:47.976][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-13 01:03:47.978][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-13 01:03:47.979][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-13 01:03:47.979][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-13 01:03:47.980][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-13 01:03:47.981][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-13 01:03:47.982][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-13 01:03:47.986][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-13 01:03:47.988][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-13 01:03:47.990][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:47.991][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:47.992][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:47.994][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-13 01:03:47.996][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-13 01:03:47.997][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-13 01:03:47.999][biodb::testThat]
biodb.INFO [2024-06-13 01:03:48.000][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-06-13 01:03:48.001][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-13 01:03:48.003][biodb::testThat]
biodb.DEBUG[2024-06-13 01:03:48.005][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-13 01:03:48.006][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-13 01:03:48.008][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-13 01:03:48.012][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:48.014][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:48.016][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:48.018][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:48.019][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:48.021][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:48.022][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:48.023][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:48.025][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:48.026][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:48.027][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-06-13 01:03:48.029][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-13 01:03:48.031][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-13 01:03:48.033][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:48.035][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-13 01:03:48.037][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-13 01:03:48.039][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-13 01:03:48.043][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-13 01:03:48.045][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-13 01:03:48.052][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:48.054][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:48.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:48.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:48.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:48.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:48.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:48.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:48.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:48.279][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.290][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.291][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.306][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.308][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.314][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.320][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.322][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.324][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.331][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.342][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.344][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.375][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.376][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.386][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.388][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.397][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:48.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:48.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.414][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:48.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:48.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.420][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:48.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:48.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:48.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.432][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.442][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.452][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.462][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.463][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.472][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:48.474][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:48.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.476][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.483][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:48.484][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.488][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.516][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.521][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.536][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:48.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:48.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.645][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:48.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:48.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:48.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:48.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:48.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:48.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:48.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:48.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:48.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:48.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:48.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.921][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:48.977][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-13 01:03:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:48.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:48.999][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:49.015][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:49.017][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:49.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:49.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:49.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:49.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:49.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:49.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:49.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:49.083][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-13 01:03:49.084][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-13 01:03:49.086][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.088][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-13 01:03:49.111][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-13 01:03:49.113][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-13 01:03:49.116][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-13 01:03:49.117][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-13 01:03:49.119][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-13 01:03:49.120][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-13 01:03:49.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:49.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:49.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:49.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:49.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:49.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:49.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:49.156][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.167][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.168][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.178][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.180][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.194][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.196][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.228][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.230][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.242][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.243][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.262][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.264][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.273][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.279][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.290][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:49.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:49.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:49.302][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:49.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:49.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:49.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.323][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.334][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.344][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.346][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.355][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:49.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:49.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.365][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:49.366][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-13 01:03:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.400][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-13 01:03:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.422][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-13 01:03:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-13 01:03:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-13 01:03:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-13 01:03:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-13 01:03:49.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-13 01:03:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.508][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:49.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-13 01:03:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-13 01:03:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:49.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:49.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-13 01:03:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-13 01:03:49.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-13 01:03:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-13 01:03:49.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-13 01:03:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.640][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-13 01:03:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:49.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:49.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-13 01:03:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-13 01:03:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:49.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.687][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-13 01:03:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-13 01:03:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-13 01:03:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-13 01:03:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.724][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:49.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-13 01:03:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-13 01:03:49.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-13 01:03:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:49.772][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-13 01:03:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.783][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:49.793][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:49.794][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:49.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:49.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:49.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:49.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:49.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:49.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:49.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:49.837][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-13 01:03:49.844][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-13 01:03:49.845][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-13 01:03:49.848][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.850][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.853][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:49.855][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.856][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:49.858][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:49.859][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:49.860][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:49.862][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:49.863][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:49.864][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-13 01:03:49.866][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.877][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:49.902][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:49.903][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:49.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:49.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:49.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:49.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:49.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:49.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:49.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:49.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.944][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:49.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:49.954][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-13 01:03:49.955][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:49.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:49.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:49.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:49.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:49.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:49.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:49.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-13 01:03:49.976][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-13 01:03:49.977][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-13 01:03:49.984][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-13 01:03:49.986][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.988][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.991][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-13 01:03:49.993][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-13 01:03:49.995][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-13 01:03:49.997][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-13 01:03:49.998][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-13 01:03:49.999][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-13 01:03:50.001][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-13 01:03:50.002][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-13 01:03:50.003][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-13 01:03:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.026][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:50.041][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-13 01:03:50.042][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-06-13 01:03:50.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:50.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:50.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:50.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:50.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:50.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:50.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-13 01:03:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-13 01:03:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-13 01:03:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-13 01:03:50.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-13 01:03:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-13 01:03:50.112][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-13 01:03:50.113][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-13 01:03:50.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-13 01:03:50.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:50.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:50.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:50.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:50.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:50.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-13 01:03:50.261][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-13 01:03:50.263][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-13 01:03:50.264][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-13 01:03:50.266][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-13 01:03:50.267][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-13 01:03:50.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-13 01:03:50.270][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-13 01:03:50.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-13 01:03:50.272][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-13 01:03:50.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  11.07    1.01   27.65

Example timings