Pierrick Roger
| Snapshot Date: 2024-06-26 14:00 -0400 (Wed, 26 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_19 |
| git_last_commit: a7f41b2 |
| git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-28 17:39 -0400 (Fri, 28 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings biodbHmdb_1.10.0.tar.gz |
| StartedAt: 2024-06-26 21:01:30 -0400 (Wed, 26 Jun 2024) |
| EndedAt: 2024-06-26 21:02:19 -0400 (Wed, 26 Jun 2024) |
| EllapsedTime: 49.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings biodbHmdb_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs
See
‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/testthat/include' -I/usr/local/include -fpic -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-06-26 21:02:02.556][biodb::testContext]
biodb.INFO [2024-06-26 21:02:02.559][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:02.559][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-06-26 21:02:02.560][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:02.561][biodb::testContext]
biodb.INFO [2024-06-26 21:02:02.563][biodb::testThat]
biodb.INFO [2024-06-26 21:02:02.564][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-06-26 21:02:02.565][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:02.565][biodb::testThat]
biodb.INFO [2024-06-26 21:02:02.653][biodb::testContext]
biodb.INFO [2024-06-26 21:02:02.654][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:02.655][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-06-26 21:02:02.656][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:02.657][biodb::testContext]
biodb.INFO [2024-06-26 21:02:02.665][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 21:02:02.667][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 21:02:02.674][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:02.682][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 21:02:02.683][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 21:02:02.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.689][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 21:02:02.712][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 21:02:02.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.716][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 21:02:02.717][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 21:02:02.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.721][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 21:02:02.723][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 21:02:02.724][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 21:02:02.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.727][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 21:02:02.728][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 21:02:02.729][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 21:02:02.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.733][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 21:02:02.734][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 21:02:02.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.738][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 21:02:02.739][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 21:02:02.740][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 21:02:02.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.743][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 21:02:02.745][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 21:02:02.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.748][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 21:02:02.749][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 21:02:02.750][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 21:02:02.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.754][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 21:02:02.755][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 21:02:02.756][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 21:02:02.757][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 21:02:02.758][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 21:02:02.759][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 21:02:02.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.763][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 21:02:02.764][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 21:02:02.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.768][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 21:02:02.769][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 21:02:02.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.772][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 21:02:02.773][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 21:02:02.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.777][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 21:02:02.778][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 21:02:02.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.782][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 21:02:02.783][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 21:02:02.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.787][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 21:02:02.788][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 21:02:02.791][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 21:02:02.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.795][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 21:02:02.796][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 21:02:02.797][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 21:02:02.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.804][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 21:02:02.840][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.856][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 21:02:02.858][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.859][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:02.860][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.861][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.862][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.863][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.864][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 21:02:02.875][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:02.876][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.876][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 21:02:02.877][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:02.878][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.879][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.880][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:02.880][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 21:02:02.880][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 21:02:02.880][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 21:02:02.880][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 21:02:02.881][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:02.882][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.883][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.884][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:02.885][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.885][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.886][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.887][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.888][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:02.889][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:02.890][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.891][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.892][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 21:02:02.893][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.894][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 21:02:02.895][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.896][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:02.897][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.898][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.899][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.900][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.901][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 21:02:02.902][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:02.903][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.904][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 21:02:02.905][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:02.906][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.906][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.907][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:02.907][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 21:02:02.907][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 21:02:02.907][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 21:02:02.907][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 21:02:02.908][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:02.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.911][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:02.912][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.913][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.914][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.915][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.915][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:02.916][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:02.917][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.918][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.919][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 21:02:02.921][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.922][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 21:02:02.923][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.924][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:02.925][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.925][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.926][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.927][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.928][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 21:02:02.929][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:02.930][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.931][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 21:02:02.932][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:02.933][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.934][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.935][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.936][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:02.937][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.937][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.938][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:02.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.941][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.942][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:02.944][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:02.945][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.946][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.947][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 21:02:02.948][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.949][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 21:02:02.950][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.951][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:02.952][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.953][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.954][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.955][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.956][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 21:02:02.957][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:02.958][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.959][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 21:02:02.960][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:02.961][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.962][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:02.962][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.963][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:02.964][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.965][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.966][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:02.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:02.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:02.969][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:02.970][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.970][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:02.971][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:02.972][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:02.973][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:02.977][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:02.978][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:02.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:02.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:02.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:02.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:02.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:02.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:02.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:02.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:02.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:02.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:02.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:02.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:02.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.026][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.055][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 21:02:03.059][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 21:02:03.061][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 21:02:03.062][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 21:02:03.063][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 21:02:03.065][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 21:02:03.066][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 21:02:03.067][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 21:02:03.068][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 21:02:03.070][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 21:02:03.071][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 21:02:03.072][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 21:02:03.074][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 21:02:03.075][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 21:02:03.076][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 21:02:03.077][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 21:02:03.079][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 21:02:03.080][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 21:02:03.081][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 21:02:03.082][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 21:02:03.084][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 21:02:03.085][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 21:02:03.086][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 21:02:03.088][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 21:02:03.089][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 21:02:03.090][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 21:02:03.091][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 21:02:03.093][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 21:02:03.094][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 21:02:03.095][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 21:02:03.097][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 21:02:03.098][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 21:02:03.099][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 21:02:03.101][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 21:02:03.102][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 21:02:03.103][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 21:02:03.104][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 21:02:03.106][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 21:02:03.107][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 21:02:03.108][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 21:02:03.110][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 21:02:03.111][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 21:02:03.112][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 21:02:03.114][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 21:02:03.115][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 21:02:03.116][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 21:02:03.117][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 21:02:03.119][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 21:02:03.120][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 21:02:03.121][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 21:02:03.123][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 21:02:03.124][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 21:02:03.125][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 21:02:03.127][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 21:02:03.128][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 21:02:03.129][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 21:02:03.131][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 21:02:03.132][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 21:02:03.133][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 21:02:03.135][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 21:02:03.136][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 21:02:03.137][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 21:02:03.139][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 21:02:03.140][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 21:02:03.141][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 21:02:03.143][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 21:02:03.144][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 21:02:03.145][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 21:02:03.147][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 21:02:03.148][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 21:02:03.149][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 21:02:03.151][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 21:02:03.152][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 21:02:03.153][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 21:02:03.154][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 21:02:03.156][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 21:02:03.157][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 21:02:03.158][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 21:02:03.160][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 21:02:03.161][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 21:02:03.162][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 21:02:03.164][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 21:02:03.165][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 21:02:03.171][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 21:02:03.172][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 21:02:03.176][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:03.176][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.178][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.282][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:03.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:03.289][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-26 21:02:03.298][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:03.300][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:03.302][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 21:02:03.303][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:03.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:03.304][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:03.305][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-26 21:02:03.306][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:03.307][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:03.308][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 21:02:03.309][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:03.310][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:03.311][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-26 21:02:03.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-26 21:02:03.313][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-26 21:02:03.314][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:03.315][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:03.315][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-26 21:02:03.315][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-26 21:02:03.316][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 21:02:03.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:03.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:03.319][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:03.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:03.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:03.322][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:03.322][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-26 21:02:03.322][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-26 21:02:03.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:03.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:03.325][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:03.326][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:03.332][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-26 21:02:03.333][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 21:02:03.335][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 21:02:03.337][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 21:02:03.338][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 21:02:03.362][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:03.363][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-26 21:02:03.368][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:03.372][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:03.377][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:03.378][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:03.380][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-26 21:02:03.424][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-26 21:02:03.426][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-26 21:02:03.426][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-26 21:02:03.427][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:03.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:03.429][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-26 21:02:03.430][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-26 21:02:03.431][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:03.447][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:03.449][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:03.450][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:03.451][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:03.452][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:03.453][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-26 21:02:03.461][biodb::testThat]
biodb.INFO [2024-06-26 21:02:03.462][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-06-26 21:02:03.463][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:03.464][biodb::testThat]
biodb.TRACE[2024-06-26 21:02:03.468][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-06-26 21:02:03.470][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:03.473][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:03.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:03.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:03.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:03.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:03.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:03.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:03.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:03.502][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:03.503][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:03.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.522][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.523][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.554][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.555][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.558][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.562][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.563][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.586][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.587][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.593][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.595][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.604][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.609][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.610][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.617][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.618][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.625][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:03.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:03.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.628][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:03.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:03.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.636][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.650][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.658][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.665][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:03.666][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:03.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.668][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:03.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:03.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.676][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:03.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:03.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.681][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:03.682][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.685][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:03.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:03.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.735][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.739][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.743][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:03.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.755][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:03.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:03.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:03.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:03.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:03.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:03.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:03.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:03.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:03.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:03.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:03.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:03.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:03.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:03.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.916][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.920][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:03.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:03.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:03.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:03.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:03.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:03.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:03.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.936][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.951][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:03.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:04.037][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-26 21:02:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 21:02:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 21:02:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 21:02:04.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 21:02:04.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-26 21:02:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-26 21:02:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.050][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-26 21:02:04.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-26 21:02:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.078][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.119][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:04.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.149][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.176][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.177][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.205][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.206][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.273][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.277][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.292][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.340][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.341][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.344][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.367][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.391][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.395][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.396][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.399][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.421][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.424][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.452][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.453][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.479][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.480][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.507][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.508][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.613][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.617][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.621][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.622][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.624][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.635][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.642][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.643][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.649][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.651][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.664][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.665][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.671][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.672][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.678][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.679][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.685][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.686][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.692][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.693][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.698][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.708][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.725][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.726][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.738][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.739][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.752][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.753][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.762][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 21:02:04.768][biodb::testThat]
biodb.INFO [2024-06-26 21:02:04.769][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-26 21:02:04.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:04.771][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:04.784][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-26 21:02:04.791][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-26 21:02:04.796][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:04.798][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-26 21:02:04.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-26 21:02:04.801][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 21:02:04.803][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-26 21:02:04.804][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 21:02:04.827][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:04.828][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:04.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:04.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:04.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:04.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:04.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:04.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:04.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:04.842][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.855][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.855][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.858][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:04.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.862][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.863][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.866][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.870][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.871][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.874][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:04.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.886][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.887][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:04.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:04.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.909][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:04.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.917][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.918][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:04.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.929][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:04.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:04.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.944][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:04.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:04.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.958][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.965][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.966][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.970][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.974][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:04.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:04.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.982][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:04.988][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:04.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:04.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:04.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:04.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.007][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:05.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.023][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:05.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:05.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:05.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:05.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:05.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:05.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:05.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:05.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:05.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:05.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:05.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:05.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:05.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:05.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:05.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:05.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:05.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:05.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:05.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:05.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.094][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:05.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:05.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:05.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.148][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:05.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:05.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:05.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:05.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:05.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:05.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:05.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:05.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.190][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:05.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:05.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:05.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.208][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:05.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:05.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:05.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.247][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.251][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.289][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-26 21:02:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-26 21:02:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-26 21:02:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-26 21:02:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-26 21:02:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-26 21:02:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-26 21:02:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 21:02:05.307][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.308][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-26 21:02:05.309][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:05.310][biodb::testThat]
biodb.TRACE[2024-06-26 21:02:05.313][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.316][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.317][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-06-26 21:02:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.354][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-06-26 21:02:05.356][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-26 21:02:05.357][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-26 21:02:05.357][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-26 21:02:05.359][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.360][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.362][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:05.363][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.364][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:05.365][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:05.366][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:05.368][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:05.369][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:05.369][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:05.370][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-26 21:02:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.391][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:05.392][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:05.393][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-26 21:02:05.403][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.404][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.406][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.407][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-06-26 21:02:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.421][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.424][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.431][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-06-26 21:02:05.480][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-26 21:02:05.481][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-26 21:02:05.482][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-26 21:02:05.500][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.501][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.502][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:05.504][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.505][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:05.519][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:05.520][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:05.521][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:05.522][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:05.523][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:05.523][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-26 21:02:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.536][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:05.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.540][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:05.541][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:05.542][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-26 21:02:05.551][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.552][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.554][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.555][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-06-26 21:02:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.578][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-06-26 21:02:05.580][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-06-26 21:02:05.580][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-26 21:02:05.581][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-26 21:02:05.583][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.584][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.586][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:05.587][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.588][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:05.589][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:05.590][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:05.591][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:05.592][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:05.593][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:05.594][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-26 21:02:05.595][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.603][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.607][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:05.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.611][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:05.611][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:05.612][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-06-26 21:02:05.629][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.630][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-06-26 21:02:05.631][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:05.632][biodb::testThat]
biodb.TRACE[2024-06-26 21:02:05.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.662][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-26 21:02:05.663][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-26 21:02:05.664][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-26 21:02:05.665][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.667][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.668][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:05.670][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:05.670][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:05.672][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:05.673][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:05.674][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:05.674][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:05.675][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:05.676][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-26 21:02:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:05.693][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:05.694][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-06-26 21:02:05.707][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.708][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-06-26 21:02:05.709][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:05.709][biodb::testThat]
biodb.TRACE[2024-06-26 21:02:05.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-26 21:02:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-26 21:02:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-26 21:02:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-26 21:02:05.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-26 21:02:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-26 21:02:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-26 21:02:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:05.800][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-26 21:02:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-26 21:02:05.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:05.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 21:02:05.809][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.810][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-26 21:02:05.811][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:05.812][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.820][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.821][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-26 21:02:05.822][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:05.823][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.830][biodb::testThat]
biodb.INFO [2024-06-26 21:02:05.831][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-26 21:02:05.832][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:05.833][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:05.837][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-06-26 21:02:07.287][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-06-26 21:02:07.398][biodb::testThat]
biodb.INFO [2024-06-26 21:02:07.399][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-26 21:02:07.400][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:07.401][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:08.392][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-06-26 21:02:08.419][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:08.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:08.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.428][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:08.431][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:08.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.437][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:08.440][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:08.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.444][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 21:02:08.447][biodb::testThat]
biodb.INFO [2024-06-26 21:02:08.449][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-06-26 21:02:08.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:08.453][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:08.456][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-06-26 21:02:08.519][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-26 21:02:08.521][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.522][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-26 21:02:08.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-06-26 21:02:08.539][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 21:02:08.540][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 21:02:08.541][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 21:02:08.542][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.544][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:08.545][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:08.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:08.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:08.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:08.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:08.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:08.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.561][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:08.591][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-26 21:02:08.592][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-06-26 21:02:08.607][biodb::testThat]
biodb.INFO [2024-06-26 21:02:08.608][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-06-26 21:02:08.609][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:08.609][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:08.616][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-06-26 21:02:08.617][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-06-26 21:02:08.618][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-26 21:02:08.620][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.621][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-26 21:02:08.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-06-26 21:02:08.624][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-26 21:02:08.625][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-26 21:02:08.627][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 21:02:08.628][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.629][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:08.630][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:08.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:08.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:08.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:08.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:08.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:08.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:08.642][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.646][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:08.694][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-26 21:02:08.695][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-06-26 21:02:08.696][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-06-26 21:02:08.707][biodb::testThat]
biodb.INFO [2024-06-26 21:02:08.708][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-06-26 21:02:08.709][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:08.710][biodb::testThat]
biodb.INFO [2024-06-26 21:02:08.730][biodb::testThat]
biodb.INFO [2024-06-26 21:02:08.731][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-06-26 21:02:08.732][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:08.732][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:08.735][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.736][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.737][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:08.739][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.740][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:08.741][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:08.742][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:08.743][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:08.744][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-06-26 21:02:08.750][biodb::testThat]
biodb.INFO [2024-06-26 21:02:08.751][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-06-26 21:02:08.752][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:08.753][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:08.755][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.757][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.758][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:08.759][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:08.760][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:08.761][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:08.762][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:08.763][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:08.764][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-06-26 21:02:08.772][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:08.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:08.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.775][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:08.776][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:08.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:08.779][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:08.780][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:08.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:08.782][ef$get] fields variable is a list.
biodb.INFO [2024-06-26 21:02:08.783][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 21:02:08.784][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-26 21:02:08.797][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-26 21:02:08.798][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 21:02:08.799][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:08.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:08.800][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:08.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:08.802][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 21:02:08.806][biodb::testContext]
biodb.INFO [2024-06-26 21:02:08.807][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:08.808][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-06-26 21:02:08.809][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:08.810][biodb::testContext]
biodb.INFO [2024-06-26 21:02:08.813][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 21:02:08.815][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 21:02:08.818][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:08.819][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 21:02:08.820][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 21:02:08.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.824][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 21:02:08.825][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 21:02:08.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.828][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 21:02:08.829][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 21:02:08.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.833][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 21:02:08.834][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 21:02:08.835][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 21:02:08.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.838][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 21:02:08.839][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 21:02:08.840][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 21:02:08.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.843][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 21:02:08.844][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 21:02:08.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.848][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 21:02:08.849][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 21:02:08.850][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 21:02:08.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.853][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 21:02:08.854][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 21:02:08.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.857][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 21:02:08.858][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 21:02:08.859][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 21:02:08.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.863][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 21:02:08.864][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 21:02:08.865][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 21:02:08.866][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 21:02:08.866][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 21:02:08.867][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 21:02:08.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.871][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 21:02:08.872][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 21:02:08.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.876][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 21:02:08.877][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 21:02:08.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.880][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 21:02:08.881][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 21:02:08.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.884][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 21:02:08.885][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 21:02:08.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.889][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 21:02:08.890][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 21:02:08.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.898][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 21:02:08.899][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 21:02:08.904][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 21:02:08.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.907][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 21:02:08.908][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 21:02:08.909][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 21:02:08.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:08.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:08.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:08.913][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 21:02:08.914][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.915][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 21:02:08.916][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.917][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:08.918][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.919][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.920][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.922][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 21:02:08.923][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:08.924][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.925][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 21:02:08.926][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:08.927][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.927][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.928][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:08.928][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 21:02:08.928][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 21:02:08.928][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 21:02:08.928][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 21:02:08.930][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:08.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:08.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:08.932][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:08.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:08.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:08.935][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.936][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.937][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:08.937][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:08.938][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.939][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.940][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 21:02:08.942][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.943][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 21:02:08.944][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.945][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:08.946][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.947][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.948][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.949][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.950][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 21:02:08.951][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:08.952][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.952][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 21:02:08.953][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:08.955][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.956][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.957][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:08.957][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 21:02:08.957][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 21:02:08.957][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 21:02:08.957][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 21:02:08.958][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:08.959][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:08.959][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:08.960][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:08.961][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:08.962][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:08.963][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.964][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.965][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:08.966][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:08.967][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.967][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.969][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 21:02:08.970][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.971][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 21:02:08.972][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.973][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:08.974][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.975][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.976][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.977][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.978][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 21:02:08.981][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:08.983][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:08.984][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 21:02:08.985][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:08.986][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.987][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:08.988][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.989][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:08.990][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:08.991][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:08.993][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:08.994][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:08.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:08.996][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:08.997][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:08.998][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:08.999][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:09.000][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.001][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:09.002][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 21:02:09.004][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.022][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 21:02:09.024][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.025][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:09.027][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.028][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:09.029][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.030][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:09.031][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 21:02:09.032][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:09.033][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.034][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 21:02:09.035][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:09.036][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:09.037][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.038][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:09.039][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:09.040][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:09.041][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:09.042][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:09.043][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:09.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:09.045][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:09.046][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:09.047][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:09.048][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:09.049][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.050][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:09.052][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:09.053][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.134][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 21:02:09.135][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 21:02:09.137][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 21:02:09.138][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 21:02:09.139][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 21:02:09.141][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 21:02:09.142][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 21:02:09.143][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 21:02:09.144][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 21:02:09.146][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 21:02:09.147][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 21:02:09.148][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 21:02:09.149][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 21:02:09.151][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 21:02:09.152][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 21:02:09.153][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 21:02:09.155][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 21:02:09.156][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 21:02:09.157][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 21:02:09.158][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 21:02:09.160][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 21:02:09.161][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 21:02:09.162][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 21:02:09.164][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 21:02:09.165][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 21:02:09.166][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 21:02:09.168][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 21:02:09.169][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 21:02:09.170][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 21:02:09.172][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 21:02:09.173][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 21:02:09.174][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 21:02:09.175][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 21:02:09.177][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 21:02:09.178][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 21:02:09.179][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 21:02:09.181][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 21:02:09.182][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 21:02:09.183][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 21:02:09.184][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 21:02:09.186][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 21:02:09.187][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 21:02:09.188][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 21:02:09.190][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 21:02:09.191][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 21:02:09.192][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 21:02:09.193][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 21:02:09.195][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 21:02:09.196][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 21:02:09.198][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 21:02:09.199][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 21:02:09.200][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 21:02:09.202][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 21:02:09.203][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 21:02:09.204][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 21:02:09.206][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 21:02:09.207][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 21:02:09.208][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 21:02:09.210][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 21:02:09.211][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 21:02:09.212][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 21:02:09.214][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 21:02:09.215][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 21:02:09.216][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 21:02:09.218][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 21:02:09.219][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 21:02:09.220][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 21:02:09.222][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 21:02:09.223][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 21:02:09.224][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 21:02:09.230][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 21:02:09.232][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 21:02:09.233][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 21:02:09.235][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 21:02:09.236][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 21:02:09.237][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 21:02:09.238][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 21:02:09.240][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 21:02:09.241][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 21:02:09.242][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 21:02:09.244][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 21:02:09.245][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 21:02:09.246][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 21:02:09.248][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 21:02:09.249][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 21:02:09.250][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:09.251][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.253][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.360][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-26 21:02:09.361][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:09.363][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.364][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 21:02:09.365][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.366][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:09.367][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.368][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-26 21:02:09.369][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.370][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:09.371][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 21:02:09.372][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:09.373][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.374][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-26 21:02:09.375][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-26 21:02:09.376][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-26 21:02:09.377][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:09.378][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:09.378][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-26 21:02:09.378][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-26 21:02:09.379][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 21:02:09.380][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:09.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:09.381][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:09.382][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:09.383][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:09.384][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:09.385][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-26 21:02:09.385][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-26 21:02:09.386][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:09.387][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:09.388][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:09.388][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:09.390][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-26 21:02:09.391][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 21:02:09.393][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 21:02:09.394][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 21:02:09.396][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 21:02:09.399][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:09.400][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-26 21:02:09.401][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:09.402][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:09.403][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:09.404][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:09.405][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-26 21:02:09.406][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-26 21:02:09.407][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-26 21:02:09.407][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-26 21:02:09.408][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:09.409][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:09.410][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-26 21:02:09.411][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-26 21:02:09.412][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:09.413][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:09.414][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:09.415][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:09.417][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:09.418][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:09.419][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-26 21:02:09.420][biodb::testThat]
biodb.INFO [2024-06-26 21:02:09.421][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-06-26 21:02:09.422][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:09.423][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:09.426][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:09.428][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:09.429][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:09.435][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:09.436][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:09.437][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:09.438][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:09.439][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:09.440][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:09.443][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-06-26 21:02:09.448][biodb::testThat]
biodb.INFO [2024-06-26 21:02:09.449][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-06-26 21:02:09.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:09.451][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:09.452][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-26 21:02:09.453][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-26 21:02:09.455][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:09.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-26 21:02:09.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-26 21:02:09.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 21:02:09.461][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-26 21:02:09.462][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 21:02:09.463][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:09.464][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:09.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:09.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:09.478][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.486][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.487][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.488][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.490][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.494][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.495][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.498][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.502][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.503][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.506][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.512][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.518][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.519][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.525][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.527][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.529][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.530][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.547][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.548][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.554][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.555][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.557][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.562][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:09.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:09.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.565][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:09.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:09.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:09.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:09.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.586][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.601][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:09.602][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.604][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.605][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:09.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:09.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:09.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.612][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:09.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:09.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.617][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:09.618][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.637][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:09.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:09.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:09.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:09.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.721][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:09.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:09.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:09.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:09.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.736][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:09.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:09.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:09.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:09.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:09.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:09.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:09.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:09.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:09.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:09.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:09.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:09.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:09.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:09.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:09.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:09.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.890][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:09.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:09.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:09.917][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-26 21:02:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:09.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:09.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:09.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:09.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-26 21:02:09.934][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 21:02:09.935][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-26 21:02:09.937][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-26 21:02:09.938][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 21:02:09.938][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:09.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:09.940][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:09.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:09.942][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 21:02:09.951][biodb::testContext]
biodb.INFO [2024-06-26 21:02:09.952][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:09.953][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-06-26 21:02:09.954][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-26 21:02:09.955][biodb::testContext]
biodb.INFO [2024-06-26 21:02:09.958][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-26 21:02:09.960][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-06-26 21:02:09.963][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:09.964][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-26 21:02:09.965][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-26 21:02:09.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.969][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-26 21:02:09.970][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-26 21:02:09.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.973][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-26 21:02:09.974][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-26 21:02:09.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.978][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-26 21:02:09.979][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-26 21:02:09.980][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-26 21:02:09.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.983][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-26 21:02:09.984][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-26 21:02:09.985][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-26 21:02:09.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.988][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-26 21:02:09.989][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-26 21:02:09.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.993][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-26 21:02:09.994][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-26 21:02:09.995][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-26 21:02:09.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:09.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:09.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:09.998][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-26 21:02:09.999][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-26 21:02:10.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.002][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-26 21:02:10.003][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-26 21:02:10.004][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-26 21:02:10.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.008][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-26 21:02:10.009][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-26 21:02:10.010][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-26 21:02:10.011][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-26 21:02:10.012][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-26 21:02:10.012][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-26 21:02:10.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.016][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-26 21:02:10.017][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-26 21:02:10.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.021][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-26 21:02:10.022][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-26 21:02:10.023][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.025][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-26 21:02:10.026][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-26 21:02:10.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.030][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-26 21:02:10.031][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-26 21:02:10.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.034][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-26 21:02:10.035][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-26 21:02:10.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.039][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-26 21:02:10.040][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-26 21:02:10.043][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-26 21:02:10.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.047][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-26 21:02:10.048][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-26 21:02:10.049][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-26 21:02:10.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.058][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-26 21:02:10.060][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.061][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-26 21:02:10.062][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.063][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:10.063][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.065][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.066][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.067][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.068][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 21:02:10.069][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:10.070][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.071][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-26 21:02:10.071][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:10.072][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.073][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.074][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:10.074][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 21:02:10.074][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 21:02:10.074][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 21:02:10.074][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 21:02:10.075][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:10.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.078][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:10.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.081][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.082][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.083][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:10.083][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:10.084][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.085][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.086][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-26 21:02:10.088][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.089][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 21:02:10.090][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.091][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:10.092][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.093][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.094][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.095][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.096][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 21:02:10.096][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:10.097][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.099][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-26 21:02:10.100][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:10.101][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.101][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.103][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:10.103][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-26 21:02:10.103][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-26 21:02:10.103][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-26 21:02:10.103][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-26 21:02:10.104][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:10.105][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.105][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.106][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:10.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.108][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.109][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.110][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.111][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:10.112][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:10.113][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.114][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.115][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-26 21:02:10.116][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.117][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-26 21:02:10.118][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.119][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:10.120][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.121][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.122][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.123][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.124][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-26 21:02:10.125][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:10.126][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.127][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-26 21:02:10.128][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:10.129][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.130][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.131][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.132][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:10.133][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.134][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:10.135][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.137][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.138][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.139][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:10.140][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:10.141][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.142][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.143][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-26 21:02:10.144][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.145][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-26 21:02:10.146][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.147][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:10.148][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.149][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.150][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.151][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.156][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-26 21:02:10.158][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:10.159][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.160][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-26 21:02:10.161][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:10.162][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.162][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.163][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.164][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-26 21:02:10.165][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.166][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.167][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:10.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.170][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.171][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:10.172][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:10.173][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.174][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.175][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:10.176][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.257][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-26 21:02:10.259][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-26 21:02:10.260][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-26 21:02:10.262][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-26 21:02:10.263][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-26 21:02:10.265][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 21:02:10.266][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-26 21:02:10.267][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-26 21:02:10.269][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-26 21:02:10.270][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 21:02:10.271][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 21:02:10.273][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-26 21:02:10.274][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-26 21:02:10.275][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-26 21:02:10.277][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-26 21:02:10.278][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 21:02:10.279][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-26 21:02:10.281][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-26 21:02:10.282][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-26 21:02:10.284][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-26 21:02:10.285][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-26 21:02:10.286][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-26 21:02:10.288][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-26 21:02:10.289][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-26 21:02:10.290][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-26 21:02:10.292][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-26 21:02:10.293][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-26 21:02:10.294][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-26 21:02:10.296][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-26 21:02:10.297][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-26 21:02:10.298][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-26 21:02:10.300][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-26 21:02:10.301][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-26 21:02:10.302][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-26 21:02:10.304][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-26 21:02:10.305][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-26 21:02:10.306][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-26 21:02:10.308][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-26 21:02:10.309][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-26 21:02:10.310][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-26 21:02:10.312][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-26 21:02:10.313][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-26 21:02:10.314][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-26 21:02:10.316][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-26 21:02:10.317][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-26 21:02:10.318][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-26 21:02:10.320][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-26 21:02:10.321][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-26 21:02:10.322][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-26 21:02:10.324][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-26 21:02:10.325][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-26 21:02:10.326][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-26 21:02:10.328][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-26 21:02:10.329][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-26 21:02:10.330][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-26 21:02:10.332][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-26 21:02:10.333][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-26 21:02:10.334][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-26 21:02:10.336][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-26 21:02:10.337][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-26 21:02:10.338][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-26 21:02:10.340][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-26 21:02:10.341][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-26 21:02:10.342][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-26 21:02:10.343][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-26 21:02:10.345][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-26 21:02:10.346][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-26 21:02:10.348][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-26 21:02:10.349][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-26 21:02:10.350][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-26 21:02:10.357][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-26 21:02:10.359][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-26 21:02:10.360][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-26 21:02:10.362][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-26 21:02:10.363][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-26 21:02:10.364][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-26 21:02:10.365][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-26 21:02:10.367][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-26 21:02:10.368][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-26 21:02:10.369][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-26 21:02:10.371][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-26 21:02:10.372][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-26 21:02:10.373][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-26 21:02:10.375][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-26 21:02:10.376][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-26 21:02:10.377][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-26 21:02:10.378][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.380][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-26 21:02:10.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:10.488][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-26 21:02:10.490][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:10.492][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.493][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.494][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.495][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-26 21:02:10.496][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.496][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-26 21:02:10.497][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.498][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.499][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-26 21:02:10.500][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-26 21:02:10.501][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.502][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-26 21:02:10.503][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-26 21:02:10.504][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-26 21:02:10.505][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-26 21:02:10.506][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-26 21:02:10.506][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-26 21:02:10.506][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-26 21:02:10.507][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-26 21:02:10.508][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.509][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.510][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-26 21:02:10.511][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-26 21:02:10.512][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-26 21:02:10.513][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-26 21:02:10.514][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-26 21:02:10.514][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-26 21:02:10.515][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:10.516][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:10.517][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-26 21:02:10.518][self$setPropertyValue]
biodb.DEBUG[2024-06-26 21:02:10.519][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-26 21:02:10.520][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-26 21:02:10.522][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-26 21:02:10.524][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-26 21:02:10.525][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-26 21:02:10.528][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:10.529][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-26 21:02:10.530][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:10.532][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:10.533][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:10.534][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:10.535][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-26 21:02:10.536][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-26 21:02:10.537][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-26 21:02:10.537][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-26 21:02:10.538][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-26 21:02:10.539][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-26 21:02:10.540][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-26 21:02:10.541][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-26 21:02:10.542][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-26 21:02:10.543][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:10.544][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:10.545][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:10.547][private$addConnectorRules] Create new rule for URL "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-26 21:02:10.548][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-26 21:02:10.549][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-26 21:02:10.555][biodb::testThat]
biodb.INFO [2024-06-26 21:02:10.557][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-06-26 21:02:10.558][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-26 21:02:10.559][biodb::testThat]
biodb.DEBUG[2024-06-26 21:02:10.561][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-26 21:02:10.562][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-26 21:02:10.563][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-26 21:02:10.566][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:10.567][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:10.568][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:10.570][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:10.571][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:10.572][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:10.573][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:10.574][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:10.575][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:10.576][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:10.577][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-06-26 21:02:10.578][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-26 21:02:10.579][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-26 21:02:10.581][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:10.582][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-26 21:02:10.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-26 21:02:10.585][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 21:02:10.587][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-26 21:02:10.588][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 21:02:10.589][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:10.590][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:10.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:10.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:10.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:10.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:10.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:10.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:10.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:10.606][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:10.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:10.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.614][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.615][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.622][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.623][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.631][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.632][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.639][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.642][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.647][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.648][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.679][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.680][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.687][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.688][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.695][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:10.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:10.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:10.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.703][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:10.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:10.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:10.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:10.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.722][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:10.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:10.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.736][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:10.737][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:10.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.738][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:10.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:10.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.747][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:10.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.752][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:10.753][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.756][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:10.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:10.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:10.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:10.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:10.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.797][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:10.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.805][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:10.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:10.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:10.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.864][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:10.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:10.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.879][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:10.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:10.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:10.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:10.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:10.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:10.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:10.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:10.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:10.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:10.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:10.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:10.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:10.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:10.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:10.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:10.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:10.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.974][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:10.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:10.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:10.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:10.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:10.999][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:11.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.015][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:11.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.040][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.044][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.052][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.079][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-26 21:02:11.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.084][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.088][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.098][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.103][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:11.104][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:11.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:11.116][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-26 21:02:11.117][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-26 21:02:11.118][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.120][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-26 21:02:11.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-26 21:02:11.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-26 21:02:11.124][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-26 21:02:11.126][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-26 21:02:11.127][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-26 21:02:11.128][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-26 21:02:11.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:11.141][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.149][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.150][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.153][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.157][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.158][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.161][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.165][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.166][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.169][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.181][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.182][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.189][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.190][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.209][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.211][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.218][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.219][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.226][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:11.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:11.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:11.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:11.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.242][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.243][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.258][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.266][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.267][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.270][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:11.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:11.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.282][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:11.283][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.286][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-26 21:02:11.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.313][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-26 21:02:11.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.317][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.321][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.325][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-26 21:02:11.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-26 21:02:11.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-26 21:02:11.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-26 21:02:11.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-26 21:02:11.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-26 21:02:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.389][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:11.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-26 21:02:11.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-26 21:02:11.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:11.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:11.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:11.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-26 21:02:11.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-26 21:02:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.436][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.443][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-26 21:02:11.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-26 21:02:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-26 21:02:11.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.485][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.489][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-26 21:02:11.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:11.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:11.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:11.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-26 21:02:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-26 21:02:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.503][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:11.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-26 21:02:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-26 21:02:11.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-26 21:02:11.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-26 21:02:11.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.547][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.551][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-26 21:02:11.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-26 21:02:11.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-26 21:02:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.584][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-26 21:02:11.585][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.601][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.605][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:11.606][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:11.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:11.641][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-26 21:02:11.643][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-26 21:02:11.644][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-26 21:02:11.646][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.648][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.649][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:11.650][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.651][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:11.653][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:11.654][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:11.655][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:11.655][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:11.656][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:11.657][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-26 21:02:11.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.675][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.683][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.687][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:11.688][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:11.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:11.699][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.707][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.726][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-26 21:02:11.727][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:11.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-26 21:02:11.745][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-26 21:02:11.746][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-26 21:02:11.747][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-26 21:02:11.749][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.751][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.752][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-26 21:02:11.753][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-26 21:02:11.754][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-26 21:02:11.756][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-26 21:02:11.757][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-26 21:02:11.757][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-26 21:02:11.758][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-26 21:02:11.759][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-26 21:02:11.760][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-26 21:02:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.777][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.784][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.788][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-26 21:02:11.789][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-06-26 21:02:11.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-26 21:02:11.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.811][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.814][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.818][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-26 21:02:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-26 21:02:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-26 21:02:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-26 21:02:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-26 21:02:11.826][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-26 21:02:11.826][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-26 21:02:11.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-26 21:02:11.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-26 21:02:11.846][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-26 21:02:11.848][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-26 21:02:11.849][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-26 21:02:11.850][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-26 21:02:11.851][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-26 21:02:11.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-26 21:02:11.853][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-26 21:02:11.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-26 21:02:11.855][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-26 21:02:11.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
8.574 0.397 11.243