Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-07-12 17:42 -0400 (Fri, 12 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4741
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4483
merida1macOS 12.7.4 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4512
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4461
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 202/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-07-10 14:00 -0400 (Wed, 10 Jul 2024)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: RELEASE_3_19
git_last_commit: a7f41b2
git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

CHECK results for biodbHmdb on kjohnson1

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbHmdb
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
StartedAt: 2024-07-11 12:30:39 -0400 (Thu, 11 Jul 2024)
EndedAt: 2024-07-11 12:31:31 -0400 (Thu, 11 Jul 2024)
EllapsedTime: 51.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbHmdb.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-07-11 12:31:15.607][biodb::testContext]
biodb.INFO [2024-07-11 12:31:15.612][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:15.613][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-07-11 12:31:15.614][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:15.615][biodb::testContext]
biodb.INFO [2024-07-11 12:31:15.616][biodb::testThat]
biodb.INFO [2024-07-11 12:31:15.617][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-07-11 12:31:15.618][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:15.619][biodb::testThat]
biodb.INFO [2024-07-11 12:31:15.749][biodb::testContext]
biodb.INFO [2024-07-11 12:31:15.751][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:15.752][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-11 12:31:15.753][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:15.754][biodb::testContext]
biodb.INFO [2024-07-11 12:31:15.765][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-11 12:31:15.767][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-11 12:31:15.777][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:15.778][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-11 12:31:15.779][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-11 12:31:15.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.783][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-11 12:31:15.812][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-11 12:31:15.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.816][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-11 12:31:15.817][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-11 12:31:15.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.820][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-11 12:31:15.821][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-11 12:31:15.822][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-11 12:31:15.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.825][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-11 12:31:15.826][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-11 12:31:15.827][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-11 12:31:15.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.830][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-11 12:31:15.831][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-11 12:31:15.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.833][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-11 12:31:15.834][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-11 12:31:15.835][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-11 12:31:15.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.838][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-11 12:31:15.839][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-11 12:31:15.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.842][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-11 12:31:15.843][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-11 12:31:15.843][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-11 12:31:15.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.846][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-11 12:31:15.847][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-11 12:31:15.848][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-11 12:31:15.849][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-11 12:31:15.849][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-11 12:31:15.850][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-11 12:31:15.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.853][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-11 12:31:15.854][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-11 12:31:15.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.857][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-11 12:31:15.858][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-11 12:31:15.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.861][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-11 12:31:15.862][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-11 12:31:15.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.864][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-11 12:31:15.865][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-11 12:31:15.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.868][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-11 12:31:15.869][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-11 12:31:15.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.872][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-11 12:31:15.873][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-11 12:31:15.888][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-11 12:31:15.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.892][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-11 12:31:15.893][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-11 12:31:15.893][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-11 12:31:15.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:15.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:15.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:15.900][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-11 12:31:15.936][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:15.951][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-11 12:31:15.952][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.953][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:15.954][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.955][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:15.956][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:15.957][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:15.957][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 12:31:15.958][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:15.959][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.960][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-11 12:31:15.961][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:15.961][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:15.962][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.963][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:15.963][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 12:31:15.963][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 12:31:15.963][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 12:31:15.963][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 12:31:15.964][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:15.965][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:15.965][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:15.966][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:15.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:15.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:15.968][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:15.976][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:15.977][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:15.978][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:15.979][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:15.979][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:15.980][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-11 12:31:15.982][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:15.983][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 12:31:15.984][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.984][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:15.985][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.986][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:15.987][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:15.988][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:15.989][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 12:31:15.989][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:15.990][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.991][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-11 12:31:15.992][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:15.993][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:15.993][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:15.994][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:15.994][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 12:31:15.994][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 12:31:15.994][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 12:31:15.994][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 12:31:15.995][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:15.996][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:15.997][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:15.997][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:15.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:15.999][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.000][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.000][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.001][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:16.002][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:16.003][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.004][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.005][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-11 12:31:16.006][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.007][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-11 12:31:16.008][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.009][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:16.010][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.010][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.011][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.012][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.013][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 12:31:16.014][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:16.014][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.015][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-11 12:31:16.016][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:16.017][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.018][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.018][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.019][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:16.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:16.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.021][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:16.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:16.023][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.024][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.024][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.025][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:16.026][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:16.027][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.027][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.028][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-11 12:31:16.030][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.031][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 12:31:16.032][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.033][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:16.033][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.034][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.035][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.036][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.037][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 12:31:16.037][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:16.038][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.039][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-11 12:31:16.040][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:16.041][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.041][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.042][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.043][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:16.044][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:16.044][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.045][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:16.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:16.047][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.048][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.048][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.049][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:16.050][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:16.051][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.051][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.056][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:16.057][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.120][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-11 12:31:16.132][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-11 12:31:16.134][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-11 12:31:16.135][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-11 12:31:16.137][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-11 12:31:16.138][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 12:31:16.139][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-11 12:31:16.141][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-11 12:31:16.142][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-11 12:31:16.143][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 12:31:16.145][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 12:31:16.146][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-11 12:31:16.147][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-11 12:31:16.148][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-11 12:31:16.150][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-11 12:31:16.151][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 12:31:16.152][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-11 12:31:16.153][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-11 12:31:16.155][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-11 12:31:16.156][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-11 12:31:16.157][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-11 12:31:16.158][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-11 12:31:16.160][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-11 12:31:16.161][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-11 12:31:16.162][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-11 12:31:16.163][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-11 12:31:16.164][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-11 12:31:16.166][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-11 12:31:16.167][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-11 12:31:16.168][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-11 12:31:16.169][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-11 12:31:16.171][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-11 12:31:16.172][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-11 12:31:16.173][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-11 12:31:16.174][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-11 12:31:16.175][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-11 12:31:16.176][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-11 12:31:16.178][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-11 12:31:16.179][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-11 12:31:16.180][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-11 12:31:16.182][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-11 12:31:16.183][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-11 12:31:16.184][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-11 12:31:16.185][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-11 12:31:16.187][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-11 12:31:16.188][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-11 12:31:16.189][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-11 12:31:16.190][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-11 12:31:16.191][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-11 12:31:16.192][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-11 12:31:16.194][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-11 12:31:16.195][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-11 12:31:16.196][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-11 12:31:16.197][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-11 12:31:16.198][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-11 12:31:16.200][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-11 12:31:16.201][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-11 12:31:16.202][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-11 12:31:16.203][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-11 12:31:16.204][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-11 12:31:16.205][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-11 12:31:16.207][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-11 12:31:16.208][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-11 12:31:16.209][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-11 12:31:16.210][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-11 12:31:16.211][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-11 12:31:16.212][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-11 12:31:16.213][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-11 12:31:16.214][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-11 12:31:16.216][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-11 12:31:16.217][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-11 12:31:16.218][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-11 12:31:16.219][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-11 12:31:16.220][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-11 12:31:16.221][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-11 12:31:16.222][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-11 12:31:16.223][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-11 12:31:16.225][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-11 12:31:16.226][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-11 12:31:16.227][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-11 12:31:16.228][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-11 12:31:16.229][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-11 12:31:16.230][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-11 12:31:16.236][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-11 12:31:16.238][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-11 12:31:16.242][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:16.243][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.244][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:16.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:16.377][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-11 12:31:16.387][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:16.390][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.391][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.392][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.393][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:16.393][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.394][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-11 12:31:16.395][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.396][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.397][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-11 12:31:16.397][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:16.398][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.399][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-11 12:31:16.400][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-11 12:31:16.401][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-11 12:31:16.402][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:16.403][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:16.403][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-11 12:31:16.403][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-11 12:31:16.404][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-11 12:31:16.405][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:16.406][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.406][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:16.407][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:16.408][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:16.409][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:16.409][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 12:31:16.409][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-11 12:31:16.410][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:16.411][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:16.412][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:16.413][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:16.419][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-11 12:31:16.421][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 12:31:16.423][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 12:31:16.425][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 12:31:16.426][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 12:31:16.458][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:16.459][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-11 12:31:16.465][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:16.470][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:16.476][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:16.477][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:16.479][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-11 12:31:16.480][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-11 12:31:16.481][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 12:31:16.481][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-11 12:31:16.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:16.483][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:16.484][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-11 12:31:16.485][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-11 12:31:16.486][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:16.513][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:16.514][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:16.515][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:16.516][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:16.517][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:16.518][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-11 12:31:16.529][biodb::testThat]
biodb.INFO [2024-07-11 12:31:16.530][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-07-11 12:31:16.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:16.532][biodb::testThat]
biodb.TRACE[2024-07-11 12:31:16.537][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-07-11 12:31:16.539][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:16.543][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:16.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:16.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:16.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:16.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:16.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:16.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:16.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:16.578][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:16.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:16.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.581][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.598][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.599][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.630][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.631][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.637][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.638][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.645][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.647][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.651][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.652][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.658][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.659][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.676][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.681][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.682][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.688][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.688][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.690][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.694][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:16.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:16.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:16.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:16.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:16.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.704][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.722][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:16.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:16.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.724][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:16.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.729][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:16.729][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:16.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.731][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:16.736][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:16.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.742][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:16.743][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.744][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:16.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:16.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:16.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:16.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:16.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.790][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:16.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:16.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:16.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.871][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:16.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:16.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:16.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:16.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:16.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:16.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:16.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:16.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:16.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.909][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:16.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:16.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:16.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:16.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:16.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:16.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.951][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.954][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.957][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:16.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:16.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:16.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:16.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:16.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:16.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:16.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:16.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.003][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.020][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.029][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:17.057][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-11 12:31:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 12:31:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 12:31:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 12:31:17.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 12:31:17.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-11 12:31:17.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-11 12:31:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.070][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-11 12:31:17.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-11 12:31:17.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.146][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:17.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.176][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.178][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.191][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.201][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.202][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.235][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.236][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.289][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.302][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.312][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.313][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.315][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.316][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.338][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.339][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.341][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.365][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.369][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:17.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:17.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.373][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:17.374][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:17.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.412][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.422][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.423][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.425][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.472][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.473][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.475][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.504][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.505][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.530][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:17.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:17.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:17.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:17.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.586][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.587][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.588][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.617][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.641][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.648][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.649][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.650][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.666][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.671][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.672][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.679][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.680][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.682][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.689][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.694][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.696][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.702][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.704][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.705][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.710][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.711][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.713][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.718][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.719][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:17.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.721][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.726][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:17.727][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:17.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.733][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.744][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:17.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.767][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.773][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:17.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:17.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.776][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.789][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.790][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:17.807][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:17.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.808][ef$get] fields variable is a list.
biodb.INFO [2024-07-11 12:31:17.816][biodb::testThat]
biodb.INFO [2024-07-11 12:31:17.817][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-11 12:31:17.818][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:17.819][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:17.834][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-11 12:31:17.844][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 12:31:17.849][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:17.851][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 12:31:17.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 12:31:17.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 12:31:17.858][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-11 12:31:17.860][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 12:31:17.884][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:17.886][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:17.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:17.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:17.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:17.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:17.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:17.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:17.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:17.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.905][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.910][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.911][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.917][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.918][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.924][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.925][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.933][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:17.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.939][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.940][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.942][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.955][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.957][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.964][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.969][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.970][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.971][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:17.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.976][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.977][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.983][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.985][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:17.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.997][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:17.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:17.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.003][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.004][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.006][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.010][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.011][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.012][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.017][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.018][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.019][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.023][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:18.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.026][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.030][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:18.031][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.050][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:18.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:18.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:18.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.059][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:18.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:18.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.062][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:18.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:18.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:18.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:18.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:18.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:18.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:18.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:18.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:18.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:18.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:18.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:18.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:18.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:18.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.134][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:18.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:18.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:18.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:18.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:18.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:18.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:18.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.165][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:18.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:18.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.181][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:18.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:18.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:18.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:18.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.203][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.209][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:18.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:18.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.235][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.255][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:18.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:18.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.258][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:18.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:18.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.265][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:18.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:18.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:18.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.288][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-11 12:31:18.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-11 12:31:18.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-11 12:31:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-11 12:31:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-11 12:31:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-11 12:31:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-11 12:31:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-11 12:31:18.314][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.315][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-11 12:31:18.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:18.316][biodb::testThat]
biodb.TRACE[2024-07-11 12:31:18.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.322][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.323][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-07-11 12:31:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.364][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-07-11 12:31:18.366][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-11 12:31:18.367][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 12:31:18.368][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 12:31:18.370][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.371][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.372][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:18.374][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.374][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:18.376][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:18.379][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:18.380][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:18.381][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:18.382][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:18.383][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 12:31:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.399][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:18.399][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:18.400][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 12:31:18.412][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.413][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.415][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.416][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-07-11 12:31:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.431][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.434][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.440][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-07-11 12:31:18.498][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 12:31:18.500][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-11 12:31:18.501][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-07-11 12:31:18.514][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.516][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.517][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:18.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.519][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:18.535][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:18.536][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:18.537][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:18.538][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:18.539][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:18.540][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 12:31:18.542][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.555][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:18.555][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:18.556][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 12:31:18.574][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.575][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.577][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.578][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-07-11 12:31:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.597][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.602][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-07-11 12:31:18.604][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-07-11 12:31:18.605][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-11 12:31:18.606][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-07-11 12:31:18.607][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.608][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.610][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:18.611][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.612][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:18.613][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:18.614][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:18.615][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:18.615][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:18.616][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:18.617][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 12:31:18.619][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.622][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.625][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.629][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.632][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:18.633][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:18.633][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-07-11 12:31:18.649][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.651][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-07-11 12:31:18.651][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:18.652][biodb::testThat]
biodb.TRACE[2024-07-11 12:31:18.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.671][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.688][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-07-11 12:31:18.689][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 12:31:18.690][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-07-11 12:31:18.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.693][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.694][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:18.695][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:18.696][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:18.697][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:18.698][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:18.699][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:18.700][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:18.701][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:18.702][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 12:31:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:18.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:18.726][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:18.727][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-07-11 12:31:18.745][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.746][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-07-11 12:31:18.747][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:18.748][biodb::testThat]
biodb.TRACE[2024-07-11 12:31:18.770][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-11 12:31:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-11 12:31:18.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-11 12:31:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-11 12:31:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-11 12:31:18.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-11 12:31:18.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-11 12:31:18.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:18.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-11 12:31:18.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-11 12:31:18.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:18.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-11 12:31:18.854][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.855][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-11 12:31:18.855][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:18.856][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.868][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.869][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-11 12:31:18.870][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:18.871][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.881][biodb::testThat]
biodb.INFO [2024-07-11 12:31:18.882][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-11 12:31:18.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:18.884][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:18.888][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-07-11 12:31:20.597][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-07-11 12:31:20.779][biodb::testThat]
biodb.INFO [2024-07-11 12:31:20.780][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-11 12:31:20.780][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:20.781][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:21.435][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-07-11 12:31:21.615][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:21.617][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:21.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.620][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.621][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:21.622][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:21.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.623][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.624][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:21.625][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:21.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.627][ef$get] fields variable is a list.
biodb.INFO [2024-07-11 12:31:21.629][biodb::testThat]
biodb.INFO [2024-07-11 12:31:21.629][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-07-11 12:31:21.630][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:21.631][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:21.633][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-11 12:31:21.691][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 12:31:21.693][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.694][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 12:31:21.711][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-11 12:31:21.712][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-11 12:31:21.714][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-11 12:31:21.715][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 12:31:21.716][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.717][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:21.718][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:21.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:21.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:21.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:21.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:21.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:21.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:21.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:21.732][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.735][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:21.760][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-11 12:31:21.761][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-11 12:31:21.779][biodb::testThat]
biodb.INFO [2024-07-11 12:31:21.780][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-11 12:31:21.781][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:21.781][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:21.831][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-07-11 12:31:21.832][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-07-11 12:31:21.833][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 12:31:21.835][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.836][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 12:31:21.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-07-11 12:31:21.839][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-11 12:31:21.840][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-11 12:31:21.841][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 12:31:21.842][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.844][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:21.845][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:21.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:21.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:21.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:21.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:21.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:21.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:21.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:21.858][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.862][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:21.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:21.885][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-07-11 12:31:21.885][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-11 12:31:21.886][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-07-11 12:31:21.900][biodb::testThat]
biodb.INFO [2024-07-11 12:31:21.902][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-07-11 12:31:21.902][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:21.903][biodb::testThat]
biodb.INFO [2024-07-11 12:31:21.927][biodb::testThat]
biodb.INFO [2024-07-11 12:31:21.928][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-07-11 12:31:21.929][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:21.930][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:21.932][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.934][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.935][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:21.936][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.944][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:21.946][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:21.947][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:21.948][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:21.949][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-07-11 12:31:21.958][biodb::testThat]
biodb.INFO [2024-07-11 12:31:21.959][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-07-11 12:31:21.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:21.960][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:21.963][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.964][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.965][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:21.967][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:21.968][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:21.969][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:21.970][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:21.971][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:21.971][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-07-11 12:31:21.981][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:21.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:21.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.984][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.985][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:21.986][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:21.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:21.988][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:21.989][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:21.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:21.991][ef$get] fields variable is a list.
biodb.INFO [2024-07-11 12:31:21.992][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-11 12:31:21.993][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-11 12:31:22.001][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-11 12:31:22.002][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-11 12:31:22.003][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.004][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.006][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-11 12:31:22.011][biodb::testContext]
biodb.INFO [2024-07-11 12:31:22.012][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:22.013][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-07-11 12:31:22.013][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:22.014][biodb::testContext]
biodb.INFO [2024-07-11 12:31:22.019][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-11 12:31:22.021][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-11 12:31:22.026][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:22.027][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-11 12:31:22.028][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-11 12:31:22.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.031][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-11 12:31:22.032][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-11 12:31:22.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.035][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-11 12:31:22.036][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-11 12:31:22.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.039][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-11 12:31:22.040][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-11 12:31:22.041][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-11 12:31:22.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.044][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-11 12:31:22.044][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-11 12:31:22.045][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-11 12:31:22.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.048][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-11 12:31:22.049][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-11 12:31:22.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.052][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-11 12:31:22.053][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-11 12:31:22.061][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-11 12:31:22.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.065][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-11 12:31:22.065][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-11 12:31:22.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.069][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-11 12:31:22.069][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-11 12:31:22.070][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-11 12:31:22.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.073][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-11 12:31:22.074][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-11 12:31:22.075][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-11 12:31:22.076][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-11 12:31:22.078][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-11 12:31:22.079][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-11 12:31:22.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.082][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-11 12:31:22.083][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-11 12:31:22.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.086][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-11 12:31:22.087][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-11 12:31:22.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.090][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-11 12:31:22.091][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-11 12:31:22.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.094][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-11 12:31:22.095][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-11 12:31:22.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.098][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-11 12:31:22.099][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-11 12:31:22.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.102][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-11 12:31:22.103][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-11 12:31:22.117][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-11 12:31:22.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.120][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-11 12:31:22.121][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-11 12:31:22.122][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-11 12:31:22.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.126][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-11 12:31:22.127][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.128][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-11 12:31:22.129][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.130][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:22.131][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.132][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.134][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.135][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.135][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 12:31:22.136][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:22.137][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.138][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-11 12:31:22.139][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:22.140][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.141][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.142][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:22.142][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 12:31:22.142][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 12:31:22.142][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 12:31:22.142][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 12:31:22.142][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:22.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.144][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:22.146][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.146][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.147][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.148][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.149][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:22.150][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:22.151][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.152][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.153][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-11 12:31:22.155][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.156][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 12:31:22.157][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.158][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:22.159][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.160][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.161][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.162][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.163][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 12:31:22.165][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:22.166][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.167][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-11 12:31:22.168][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:22.169][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.170][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.171][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:22.171][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 12:31:22.171][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 12:31:22.171][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 12:31:22.171][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 12:31:22.172][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:22.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.182][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:22.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.184][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.185][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.185][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.186][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:22.187][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:22.188][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.189][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.190][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-11 12:31:22.191][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.192][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-11 12:31:22.193][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.194][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:22.195][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.196][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.196][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.197][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.198][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 12:31:22.199][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:22.200][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.201][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-11 12:31:22.201][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:22.202][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.204][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.205][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.206][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:22.207][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.207][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.208][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:22.209][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.210][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.211][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.212][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.213][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:22.213][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:22.214][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.215][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.216][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-11 12:31:22.218][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.219][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 12:31:22.220][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.221][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:22.222][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.222][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.223][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.224][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.225][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 12:31:22.225][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:22.226][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.227][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-11 12:31:22.228][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:22.228][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.229][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.230][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.231][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:22.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.234][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:22.235][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.237][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.239][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.240][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:22.240][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:22.241][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.242][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.244][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:22.244][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.321][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-11 12:31:22.323][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-11 12:31:22.324][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-11 12:31:22.325][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-11 12:31:22.327][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-11 12:31:22.328][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 12:31:22.329][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-11 12:31:22.330][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-11 12:31:22.332][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-11 12:31:22.333][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 12:31:22.334][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 12:31:22.335][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-11 12:31:22.337][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-11 12:31:22.338][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-11 12:31:22.340][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-11 12:31:22.341][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 12:31:22.342][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-11 12:31:22.343][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-11 12:31:22.345][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-11 12:31:22.346][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-11 12:31:22.347][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-11 12:31:22.348][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-11 12:31:22.350][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-11 12:31:22.351][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-11 12:31:22.352][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-11 12:31:22.353][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-11 12:31:22.355][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-11 12:31:22.356][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-11 12:31:22.357][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-11 12:31:22.359][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-11 12:31:22.360][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-11 12:31:22.361][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-11 12:31:22.363][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-11 12:31:22.364][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-11 12:31:22.365][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-11 12:31:22.366][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-11 12:31:22.368][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-11 12:31:22.369][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-11 12:31:22.370][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-11 12:31:22.371][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-11 12:31:22.372][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-11 12:31:22.373][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-11 12:31:22.374][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-11 12:31:22.382][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-11 12:31:22.384][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-11 12:31:22.386][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-11 12:31:22.387][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-11 12:31:22.388][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-11 12:31:22.389][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-11 12:31:22.390][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-11 12:31:22.391][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-11 12:31:22.393][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-11 12:31:22.394][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-11 12:31:22.395][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-11 12:31:22.396][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-11 12:31:22.397][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-11 12:31:22.398][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-11 12:31:22.400][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-11 12:31:22.401][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-11 12:31:22.402][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-11 12:31:22.404][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-11 12:31:22.405][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-11 12:31:22.406][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-11 12:31:22.407][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-11 12:31:22.409][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-11 12:31:22.410][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-11 12:31:22.411][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-11 12:31:22.412][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-11 12:31:22.414][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-11 12:31:22.415][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-11 12:31:22.417][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-11 12:31:22.418][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-11 12:31:22.419][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-11 12:31:22.420][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-11 12:31:22.422][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-11 12:31:22.423][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-11 12:31:22.424][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-11 12:31:22.425][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-11 12:31:22.426][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-11 12:31:22.428][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-11 12:31:22.429][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-11 12:31:22.430][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-11 12:31:22.431][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-11 12:31:22.432][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-11 12:31:22.434][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-11 12:31:22.435][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:22.436][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.438][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.454][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:22.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:22.539][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-11 12:31:22.541][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:22.543][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.544][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.545][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.545][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:22.546][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.547][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-11 12:31:22.548][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.549][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.549][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-11 12:31:22.550][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:22.551][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.552][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-11 12:31:22.553][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-11 12:31:22.554][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-11 12:31:22.555][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:22.556][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:22.556][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-11 12:31:22.556][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-11 12:31:22.557][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-11 12:31:22.558][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.558][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.559][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:22.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:22.561][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:22.562][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:22.563][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 12:31:22.563][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-11 12:31:22.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:22.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:22.565][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:22.566][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:22.567][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-11 12:31:22.569][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 12:31:22.570][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 12:31:22.572][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 12:31:22.579][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 12:31:22.584][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:22.585][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-11 12:31:22.586][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:22.587][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:22.588][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:22.589][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:22.590][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-11 12:31:22.591][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-11 12:31:22.592][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 12:31:22.592][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-11 12:31:22.593][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:22.594][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:22.595][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-11 12:31:22.595][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-11 12:31:22.596][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:22.598][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:22.599][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:22.600][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:22.601][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:22.602][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:22.603][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-11 12:31:22.604][biodb::testThat]
biodb.INFO [2024-07-11 12:31:22.605][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-07-11 12:31:22.606][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:22.607][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:22.611][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:22.613][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:22.614][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:22.616][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:22.617][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:22.618][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:22.620][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:22.621][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:22.622][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:22.625][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-07-11 12:31:22.632][biodb::testThat]
biodb.INFO [2024-07-11 12:31:22.633][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-07-11 12:31:22.634][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:22.635][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:22.637][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-11 12:31:22.638][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 12:31:22.640][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:22.642][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 12:31:22.644][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-11 12:31:22.645][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 12:31:22.647][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-11 12:31:22.649][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 12:31:22.650][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:22.652][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:22.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:22.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:22.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:22.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:22.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:22.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:22.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:22.668][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:22.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:22.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.671][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:22.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.677][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:22.678][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:22.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.682][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:22.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.688][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.689][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.697][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.698][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.701][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.719][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.725][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.726][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.727][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.734][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:22.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:22.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.744][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.748][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.749][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.752][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.757][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.758][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.765][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:22.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:22.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.768][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:22.774][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:22.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.796][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:22.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:22.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.799][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:22.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:22.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.803][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:22.804][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:22.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.806][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.807][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:22.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:22.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:22.811][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:22.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.813][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.826][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:22.827][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.830][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:22.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:22.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:22.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:22.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:22.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:22.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.844][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.851][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.863][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:22.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:22.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.931][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:22.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:22.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.935][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:22.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:22.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:22.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:22.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:22.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:22.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:22.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:22.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.973][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:22.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.009][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.023][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:23.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:23.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:23.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.039][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:23.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:23.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.075][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.078][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.085][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:23.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:23.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:23.109][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-11 12:31:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-11 12:31:23.137][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-11 12:31:23.138][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-11 12:31:23.140][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-11 12:31:23.140][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-11 12:31:23.141][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.143][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.144][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-11 12:31:23.149][biodb::testContext]
biodb.INFO [2024-07-11 12:31:23.150][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:23.151][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-07-11 12:31:23.152][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-11 12:31:23.153][biodb::testContext]
biodb.INFO [2024-07-11 12:31:23.158][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-11 12:31:23.160][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-11 12:31:23.165][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:23.166][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-11 12:31:23.167][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-11 12:31:23.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.170][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-11 12:31:23.171][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-11 12:31:23.172][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.174][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-11 12:31:23.175][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-11 12:31:23.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.178][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-11 12:31:23.179][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-11 12:31:23.180][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-11 12:31:23.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.183][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-11 12:31:23.184][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-11 12:31:23.185][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-11 12:31:23.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.188][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-11 12:31:23.189][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-11 12:31:23.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.192][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-11 12:31:23.192][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-11 12:31:23.193][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-11 12:31:23.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.196][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-11 12:31:23.197][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-11 12:31:23.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.200][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-11 12:31:23.201][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-11 12:31:23.202][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-11 12:31:23.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.205][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-11 12:31:23.206][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-11 12:31:23.206][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-11 12:31:23.207][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-11 12:31:23.208][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-11 12:31:23.209][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-11 12:31:23.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.212][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-11 12:31:23.213][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-11 12:31:23.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.216][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-11 12:31:23.217][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-11 12:31:23.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.219][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-11 12:31:23.220][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-11 12:31:23.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.231][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-11 12:31:23.232][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-11 12:31:23.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.235][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-11 12:31:23.236][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-11 12:31:23.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.239][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-11 12:31:23.240][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-11 12:31:23.257][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-11 12:31:23.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.261][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-11 12:31:23.262][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-11 12:31:23.263][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-11 12:31:23.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.266][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-11 12:31:23.268][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.269][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-11 12:31:23.270][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.271][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:23.271][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.272][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.273][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.274][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.275][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 12:31:23.276][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:23.276][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.277][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-11 12:31:23.278][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:23.279][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.280][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.280][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:23.280][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 12:31:23.280][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 12:31:23.280][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 12:31:23.280][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 12:31:23.281][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:23.282][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.283][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.284][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:23.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.288][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.289][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.290][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:23.290][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:23.291][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.292][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.293][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-11 12:31:23.295][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.296][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 12:31:23.297][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.298][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:23.299][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.300][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.301][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.302][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.303][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 12:31:23.305][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:23.306][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.307][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-11 12:31:23.308][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:23.309][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.310][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.311][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:23.311][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-11 12:31:23.311][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-11 12:31:23.311][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-11 12:31:23.311][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-11 12:31:23.312][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:23.313][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.313][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.314][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:23.315][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.317][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.318][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.319][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:23.320][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:23.321][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.322][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.323][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-11 12:31:23.325][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.326][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-11 12:31:23.327][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.328][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:23.329][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.331][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.333][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-11 12:31:23.334][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:23.336][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.336][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-11 12:31:23.337][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:23.338][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.339][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.340][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.341][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:23.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.343][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:23.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.354][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.355][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.357][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:23.358][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:23.359][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.360][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.361][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-11 12:31:23.363][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.363][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-11 12:31:23.364][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.365][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:23.366][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.367][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.368][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.368][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.369][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-11 12:31:23.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:23.371][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.372][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-11 12:31:23.374][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:23.375][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.376][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.377][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.378][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-11 12:31:23.379][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.380][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:23.381][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.382][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.383][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.384][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.385][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:23.386][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:23.387][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.388][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.390][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:23.390][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.463][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-11 12:31:23.465][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-11 12:31:23.466][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-11 12:31:23.467][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-11 12:31:23.468][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-11 12:31:23.469][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 12:31:23.471][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-11 12:31:23.472][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-11 12:31:23.473][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-11 12:31:23.474][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 12:31:23.476][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 12:31:23.477][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-11 12:31:23.478][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-11 12:31:23.479][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-11 12:31:23.480][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-11 12:31:23.481][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 12:31:23.483][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-11 12:31:23.484][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-11 12:31:23.485][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-11 12:31:23.486][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-11 12:31:23.487][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-11 12:31:23.489][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-11 12:31:23.490][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-11 12:31:23.491][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-11 12:31:23.492][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-11 12:31:23.493][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-11 12:31:23.495][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-11 12:31:23.496][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-11 12:31:23.498][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-11 12:31:23.499][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-11 12:31:23.500][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-11 12:31:23.502][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-11 12:31:23.503][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-11 12:31:23.504][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-11 12:31:23.505][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-11 12:31:23.506][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-11 12:31:23.508][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-11 12:31:23.509][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-11 12:31:23.510][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-11 12:31:23.511][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-11 12:31:23.512][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-11 12:31:23.513][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-11 12:31:23.515][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-11 12:31:23.516][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-11 12:31:23.517][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-11 12:31:23.520][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-11 12:31:23.521][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-11 12:31:23.522][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-11 12:31:23.524][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-11 12:31:23.525][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-11 12:31:23.526][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-11 12:31:23.527][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-11 12:31:23.529][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-11 12:31:23.530][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-11 12:31:23.531][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-11 12:31:23.532][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-11 12:31:23.533][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-11 12:31:23.534][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-11 12:31:23.536][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-11 12:31:23.537][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-11 12:31:23.538][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-11 12:31:23.546][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-11 12:31:23.548][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-11 12:31:23.549][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-11 12:31:23.550][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-11 12:31:23.551][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-11 12:31:23.553][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-11 12:31:23.554][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-11 12:31:23.555][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-11 12:31:23.556][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-11 12:31:23.557][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-11 12:31:23.558][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-11 12:31:23.559][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-11 12:31:23.561][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-11 12:31:23.562][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-11 12:31:23.563][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-11 12:31:23.564][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-11 12:31:23.565][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-11 12:31:23.567][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-11 12:31:23.568][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-11 12:31:23.569][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-11 12:31:23.570][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-11 12:31:23.571][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-11 12:31:23.573][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-11 12:31:23.575][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-11 12:31:23.576][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-11 12:31:23.577][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.579][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.612][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-11 12:31:23.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:23.653][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-07-11 12:31:23.654][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:23.655][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.655][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.656][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.656][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-11 12:31:23.656][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.657][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-07-11 12:31:23.657][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.658][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.658][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-11 12:31:23.658][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-11 12:31:23.659][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.659][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-07-11 12:31:23.659][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-07-11 12:31:23.660][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-11 12:31:23.661][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-11 12:31:23.661][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-07-11 12:31:23.661][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-07-11 12:31:23.661][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-11 12:31:23.661][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.662][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.662][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-11 12:31:23.662][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-11 12:31:23.663][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-11 12:31:23.663][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-11 12:31:23.663][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 12:31:23.663][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-07-11 12:31:23.664][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:23.664][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:23.664][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-11 12:31:23.665][self$setPropertyValue]
biodb.DEBUG[2024-07-11 12:31:23.665][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-07-11 12:31:23.666][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-11 12:31:23.667][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-11 12:31:23.667][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-11 12:31:23.668][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-11 12:31:23.669][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:23.670][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-07-11 12:31:23.670][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:23.671][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:23.672][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:23.672][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:23.672][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-07-11 12:31:23.673][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-07-11 12:31:23.673][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-07-11 12:31:23.673][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-07-11 12:31:23.674][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-11 12:31:23.674][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-11 12:31:23.674][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-07-11 12:31:23.675][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-07-11 12:31:23.680][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-07-11 12:31:23.682][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:23.683][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:23.683][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:23.684][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-07-11 12:31:23.684][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-11 12:31:23.685][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-07-11 12:31:23.686][biodb::testThat]
biodb.INFO [2024-07-11 12:31:23.686][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-07-11 12:31:23.686][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-11 12:31:23.687][biodb::testThat]
biodb.DEBUG[2024-07-11 12:31:23.688][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 12:31:23.688][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-11 12:31:23.689][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-07-11 12:31:23.690][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:23.691][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:23.691][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:23.692][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:23.692][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:23.693][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:23.694][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:23.694][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:23.695][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:23.695][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:23.695][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-07-11 12:31:23.696][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-07-11 12:31:23.697][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 12:31:23.697][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:23.698][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 12:31:23.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-07-11 12:31:23.699][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 12:31:23.700][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-07-11 12:31:23.701][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 12:31:23.701][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:23.702][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:23.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:23.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:23.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:23.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:23.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:23.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:23.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:23.710][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.713][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.713][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.716][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.717][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.718][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.719][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.720][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.720][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.723][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.729][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.730][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.745][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.746][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.747][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.755][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.760][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.761][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.768][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.769][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.776][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:23.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:23.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.778][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:23.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.783][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:23.783][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.785][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:23.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:23.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.799][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.804][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.805][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.806][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.811][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:23.812][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:23.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.814][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:23.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:23.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.821][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:23.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:23.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.825][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:23.826][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.828][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.829][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:23.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:23.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:23.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.851][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.854][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.860][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.864][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.867][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:23.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:23.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:23.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:23.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:23.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.922][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:23.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:23.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:23.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:23.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:23.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:23.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:23.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:23.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:23.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:23.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:23.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:23.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:23.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:23.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:23.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:23.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:23.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:23.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.989][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.996][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:23.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:23.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.017][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.027][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.038][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.039][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.053][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-07-11 12:31:24.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.062][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.065][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.075][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:24.077][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:24.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:24.091][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-07-11 12:31:24.092][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-11 12:31:24.093][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.095][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-07-11 12:31:24.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-07-11 12:31:24.098][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-11 12:31:24.099][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-07-11 12:31:24.100][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-07-11 12:31:24.102][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-07-11 12:31:24.103][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-07-11 12:31:24.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:24.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.123][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.124][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.126][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.130][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.131][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.132][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.135][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.136][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.139][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.146][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.150][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.150][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.155][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.156][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.169][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.170][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.172][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.186][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.187][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.194][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:24.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:24.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:24.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:24.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:24.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.210][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.216][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.217][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.225][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.230][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.231][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.232][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.233][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.237][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.238][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.239][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.244][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:24.245][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.247][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-07-11 12:31:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.261][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-11 12:31:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.271][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-07-11 12:31:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-11 12:31:24.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-07-11 12:31:24.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-11 12:31:24.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-11 12:31:24.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-07-11 12:31:24.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:24.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:24.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-11 12:31:24.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-11 12:31:24.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:24.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:24.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:24.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-11 12:31:24.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-11 12:31:24.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.394][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-11 12:31:24.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-11 12:31:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-11 12:31:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.426][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.429][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-07-11 12:31:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-11 12:31:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-11 12:31:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-07-11 12:31:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-11 12:31:24.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-11 12:31:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-11 12:31:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.488][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.498][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-07-11 12:31:24.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-11 12:31:24.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-11 12:31:24.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.521][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-07-11 12:31:24.522][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.525][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.535][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:24.536][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:24.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:24.552][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 12:31:24.553][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-11 12:31:24.554][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-07-11 12:31:24.556][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.557][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.559][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:24.560][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.561][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:24.562][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:24.563][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:24.570][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:24.572][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:24.574][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:24.575][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 12:31:24.577][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.581][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.584][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.586][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.593][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:24.594][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:24.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:24.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.607][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.610][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.614][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-11 12:31:24.614][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:24.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-11 12:31:24.624][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-07-11 12:31:24.624][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-11 12:31:24.625][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-07-11 12:31:24.625][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.627][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.628][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-07-11 12:31:24.629][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-07-11 12:31:24.630][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-07-11 12:31:24.630][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-07-11 12:31:24.631][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-07-11 12:31:24.632][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-07-11 12:31:24.632][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-07-11 12:31:24.633][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-07-11 12:31:24.633][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-07-11 12:31:24.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.656][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.672][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-07-11 12:31:24.673][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-07-11 12:31:24.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-11 12:31:24.685][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.689][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.692][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.695][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.699][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.703][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-11 12:31:24.706][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-11 12:31:24.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-11 12:31:24.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-11 12:31:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-11 12:31:24.710][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-07-11 12:31:24.711][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-07-11 12:31:24.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-11 12:31:24.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-11 12:31:24.728][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-11 12:31:24.730][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-07-11 12:31:24.731][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-07-11 12:31:24.731][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-11 12:31:24.732][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-11 12:31:24.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-11 12:31:24.733][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-11 12:31:24.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-11 12:31:24.735][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-11 12:31:24.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  8.565   0.513  11.607

Example timings