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This page was generated on 2024-03-28 11:41:29 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2228/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
velociraptor 1.13.1  (landing page)
Kevin Rue-Albrecht
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/velociraptor
git_branch: devel
git_last_commit: 7c71d63
git_last_commit_date: 2024-01-30 07:21:14 -0400 (Tue, 30 Jan 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for velociraptor on kunpeng2


To the developers/maintainers of the velociraptor package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: velociraptor
Version: 1.13.1
Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor
StartedAt: 2024-03-28 02:19:43 -0000 (Thu, 28 Mar 2024)
EndedAt: 2024-03-28 02:23:03 -0000 (Thu, 28 Mar 2024)
EllapsedTime: 200.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor
###
##############################################################################
##############################################################################


* checking for file ‘velociraptor/DESCRIPTION’ ... OK
* preparing ‘velociraptor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘velociraptor.Rmd’ using rmarkdown
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.15.5/velociraptor/1.13.1/env

  added / updated specs:
    - python=3.8


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h31becfc_5
  ca-certificates    conda-forge/linux-aarch64::ca-certificates-2024.2.2-hcefe29a_0
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-h2d8c526_0
  libffi             conda-forge/linux-aarch64::libffi-3.4.2-h3557bc0_5
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-13.2.0-hf8544c7_5
  libgomp            conda-forge/linux-aarch64::libgomp-13.2.0-hf8544c7_5
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h31becfc_0
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.45.2-h194ca79_0
  libuuid            conda-forge/linux-aarch64::libuuid-2.38.1-hb4cce97_0
  libxcrypt          conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
  libzlib            conda-forge/linux-aarch64::libzlib-1.2.13-h31becfc_5
  ncurses            conda-forge/linux-aarch64::ncurses-6.4.20240210-h0425590_0
  openssl            conda-forge/linux-aarch64::openssl-3.2.1-h31becfc_1
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0
  python             conda-forge/linux-aarch64::python-3.8.19-hbbe8eec_0_cpython
  readline           conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
  setuptools         conda-forge/noarch::setuptools-69.2.0-pyhd8ed1ab_0
  tk                 conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1
  xz                 conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
  current version: 4.12.0
  latest version: 24.3.0

Please update conda by running

    $ conda update -n base -c defaults conda



## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.15.5/velociraptor/1.13.1/env

  added / updated specs:
    - python=3.8


The following packages will be UPDATED:

  ca-certificates    conda-forge::ca-certificates-2024.2.2~ --> pkgs/main::ca-certificates-2024.3.11-hd43f75c_0


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - umap-learn=0.4.6
  - anndata=0.7.4
  - stdlib-list=0.6.0

Current channels:

  - https://conda.anaconda.org/bioconda/linux-aarch64
  - https://conda.anaconda.org/bioconda/noarch
  - https://conda.anaconda.org/conda-forge/linux-aarch64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/linux-aarch64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-aarch64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.



Quitting from lines 70-73 [unnamed-chunk-5] (velociraptor.Rmd)
Error: processing vignette 'velociraptor.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘velociraptor.Rmd’

SUMMARY: processing the following file failed:
  ‘velociraptor.Rmd’

Error: Vignette re-building failed.
Execution halted