Multiple platform build/check report for BioC 3.19 - INSTALL results for seqTools on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup"	4753
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup"	4518
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the seqTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqTools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqTools
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘seqTools’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/zlibbioc/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c seqTools.c -o seqTools.o
seqTools.c:851:65: warning: more '%' conversions than data arguments [-Wformat-insufficient-args]
                                error("[count_genome_Kmers] character mismatch at position %u!");
                                                                                           ~^
seqTools.c:3296:71: warning: format specifies type 'int' but the argument has type 'double' [-Wformat]
                error("[scale_kmer_matrix] scale[%i]=%i must be >1!", column_index, scale);
                                                     ~~                             ^~~~~
                                                     %f
seqTools.c:3306:75: warning: format specifies type 'int' but the argument has type 'double' [-Wformat]
                                error("[scale_kmer_matrix] scale[%i] = %i must be >1!", column_index, scale);
                                                                       ~~                             ^~~~~
                                                                       %f
3 warnings generated.
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o seqTools.so seqTools.o -lm -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-seqTools/00new/seqTools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqTools)

INSTALL results for seqTools on lconway

Summary

Command output