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This page was generated on 2024-02-22 12:48:22 -0500 (Thu, 22 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4657
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4397
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1909/2244HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqTools 1.37.0  (landing page)
Wolfgang Kaisers
Snapshot Date: 2024-02-21 14:10:10 -0500 (Wed, 21 Feb 2024)
git_url: https://git.bioconductor.org/packages/seqTools
git_branch: devel
git_last_commit: bde189f
git_last_commit_date: 2023-10-24 10:40:22 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

INSTALL results for seqTools on nebbiolo1


To the developers/maintainers of the seqTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/seqTools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: seqTools
Version: 1.37.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL seqTools
StartedAt: 2024-02-21 15:00:40 -0500 (Wed, 21 Feb 2024)
EndedAt: 2024-02-21 15:00:54 -0500 (Wed, 21 Feb 2024)
EllapsedTime: 14.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL seqTools
###
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘seqTools’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
gcc -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/zlibbioc/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c seqTools.c -o seqTools.o
seqTools.c: In function ‘count_genome_Kmers’:
seqTools.c:851:93: warning: format ‘%u’ expects a matching ‘unsigned int’ argument [-Wformat=]
  851 |                                 error("[count_genome_Kmers] character mismatch at position %u!");
      |                                                                                            ~^
      |                                                                                             |
      |                                                                                             unsigned int
seqTools.c: In function ‘scale_kmer_matrix’:
seqTools.c:3296:55: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘double’ [-Wformat=]
 3296 |                 error("[scale_kmer_matrix] scale[%i]=%i must be >1!", column_index, scale);
      |                                                      ~^                             ~~~~~
      |                                                       |                             |
      |                                                       int                           double
      |                                                      %f
seqTools.c:3306:73: warning: format ‘%i’ expects argument of type ‘int’, but argument 3 has type ‘double’ [-Wformat=]
 3306 |                                 error("[scale_kmer_matrix] scale[%i] = %i must be >1!", column_index, scale);
      |                                                                        ~^                             ~~~~~
      |                                                                         |                             |
      |                                                                         int                           double
      |                                                                        %f
gcc -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o seqTools.so seqTools.o -lm -lz -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-seqTools/00new/seqTools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (seqTools)