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This page was generated on 2023-12-09 12:25:09 -0500 (Sat, 09 Dec 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4619
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" 4379
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4388
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" 4271
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1585/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
psygenet2r 1.35.0  (landing page)
Alba Gutierrez-Sacristan
Snapshot Date: 2023-12-08 14:00:14 -0500 (Fri, 08 Dec 2023)
git_url: https://git.bioconductor.org/packages/psygenet2r
git_branch: devel
git_last_commit: 4dc93e0
git_last_commit_date: 2023-10-24 10:48:21 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for psygenet2r on kunpeng2


To the developers/maintainers of the psygenet2r package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/psygenet2r.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: psygenet2r
Version: 1.35.0
Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data psygenet2r
StartedAt: 2023-12-09 02:48:21 -0000 (Sat, 09 Dec 2023)
EndedAt: 2023-12-09 02:53:40 -0000 (Sat, 09 Dec 2023)
EllapsedTime: 319.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data psygenet2r
###
##############################################################################
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* checking for file ‘psygenet2r/DESCRIPTION’ ... OK
* preparing ‘psygenet2r’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘case_study.Rmd’ using rmarkdown
--- finished re-building ‘case_study.Rmd’

--- re-building ‘general_overview.Rmd’ using rmarkdown

Quitting from lines 242-243 [plot_psychiatric_heamap] (general_overview.Rmd)
Error: processing vignette 'general_overview.Rmd' failed with diagnostics:
The `space` argument of `pal_gradient_n()` only supports be "Lab" as of
scales 0.3.0.
--- failed re-building ‘general_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘general_overview.Rmd’

Error: Vignette re-building failed.
Execution halted