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This page was generated on 2021-10-23 14:06:05 -0400 (Sat, 23 Oct 2021).

CHECK results for msImpute on nebbiolo2

To the developers/maintainers of the msImpute package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/msImpute.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1219/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
msImpute 1.3.3  (landing page)
Soroor Hediyeh-zadeh
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/msImpute
git_branch: master
git_last_commit: 82d28b7
git_last_commit_date: 2021-10-12 02:43:45 -0400 (Tue, 12 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: msImpute
Version: 1.3.3
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:msImpute.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings msImpute_1.3.3.tar.gz
StartedAt: 2021-10-22 21:00:54 -0400 (Fri, 22 Oct 2021)
EndedAt: 2021-10-22 21:03:56 -0400 (Fri, 22 Oct 2021)
EllapsedTime: 182.0 seconds
RetCode: 0
Status:   OK  
CheckDir: msImpute.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:msImpute.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings msImpute_1.3.3.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/msImpute.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘msImpute/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘msImpute’ version ‘1.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘msImpute’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

msImpute.Rcheck/00install.out

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### Running command:
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###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL msImpute
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘msImpute’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (msImpute)

Tests output


Example timings

msImpute.Rcheck/msImpute-Ex.timings

nameusersystemelapsed
CPD0.0040.0040.009
KNC0.0090.0000.009
KNN0.0050.0000.004
computeStructuralMetrics1.3070.0321.338
findVariableFeatures0.1240.0280.152
msImpute2.4410.0282.468
plotCV20.0610.0000.061
scaleData1.3510.0201.370
selectFeatures1.4270.1001.527