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This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4677
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4416
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4444
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4393
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4373
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1292/2243HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifcounter 1.29.0  (landing page)
Wolfgang Kopp
Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024)
git_url: https://git.bioconductor.org/packages/motifcounter
git_branch: devel
git_last_commit: a85abf5
git_last_commit_date: 2024-04-30 10:57:02 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  


BUILD BIN results for motifcounter on palomino6

To the developers/maintainers of the motifcounter package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifcounter.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: motifcounter
Version: 1.29.0
Command: rm -rf motifcounter.buildbin-libdir && mkdir motifcounter.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=motifcounter.buildbin-libdir motifcounter_1.29.0.tar.gz
StartedAt: 2024-07-16 06:27:54 -0400 (Tue, 16 Jul 2024)
EndedAt: 2024-07-16 06:28:14 -0400 (Tue, 16 Jul 2024)
EllapsedTime: 20.1 seconds
RetCode: 0
Status:   OK  
PackageFile: motifcounter_1.29.0.zip
PackageFileSize: 687 KiB

Command output

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### Running command:
###
###   rm -rf motifcounter.buildbin-libdir && mkdir motifcounter.buildbin-libdir && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=motifcounter.buildbin-libdir motifcounter_1.29.0.tar.gz
###
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* installing *source* package 'motifcounter' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rbackground.c -o Rbackground.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcombinatorial.c -o Rcombinatorial.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rcompoundpoisson.c -o Rcompoundpoisson.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rminmaxscore.c -o Rminmaxscore.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Roption.c -o Roption.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Roverlap.c -o Roverlap.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rscore1d.c -o Rscore1d.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rsequence.c -o Rsequence.o
Rsequence.c: In function 'RscoreHistogram':
Rsequence.c:143:21: warning: unused variable 'noscores' [-Wunused-variable]
  143 |     int mins, maxs, noscores;
      |                     ^~~~~~~~
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rsimulate.c -o Rsimulate.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c background.c -o background.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c combinatorial.c -o combinatorial.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c compoundpoisson.c -o compoundpoisson.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c markovchain.c -o markovchain.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c markovchain_single.c -o markovchain_single.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c matrix.c -o matrix.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c mdist_register.c -o mdist_register.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c minmaxscore.c -o minmaxscore.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c overlap.c -o overlap.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c score1d.c -o score1d.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c score2d.c -o score2d.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scorefunctions.c -o scorefunctions.o
scorefunctions.c: In function 'getPositionWeights':
scorefunctions.c:84:22: warning: unused variable 'cindex' [-Wunused-variable]
   84 |     int j, i, index, cindex, ds;
      |                      ^~~~~~
scorefunctions.c: In function 'hitSequence':
scorefunctions.c:119:17: warning: unused variable 'cindex' [-Wunused-variable]
  119 |   int s, index, cindex;
      |                 ^~~~~~
scorefunctions.c: In function 'scoreSequence':
scorefunctions.c:159:19: warning: unused variable 'cindex' [-Wunused-variable]
  159 |     int s, index, cindex;
      |                   ^~~~~~
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sequence.c -o sequence.o
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG     -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DIN_R   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c simulate.c -o simulate.o
gcc -shared -s -static-libgcc -o motifcounter.dll tmp.def Rbackground.o Rcombinatorial.o Rcompoundpoisson.o Rminmaxscore.o Roption.o Roverlap.o Rscore1d.o Rsequence.o Rsimulate.o background.o combinatorial.o compoundpoisson.o markovchain.o markovchain_single.o matrix.o mdist_register.o minmaxscore.o overlap.o score1d.o score2d.o scorefunctions.o sequence.o simulate.o -fopenmp -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/meat/motifcounter.buildbin-libdir/00LOCK-motifcounter/00new/motifcounter/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'motifcounter' as motifcounter_1.29.0.zip
* DONE (motifcounter)