Back to Multiple platform build/check report for BioC 3.16
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This page was generated on 2022-06-24 11:07:58 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for graph on lconway


To the developers/maintainers of the graph package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graph.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 830/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graph 1.75.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/graph
git_branch: master
git_last_commit: b88531e
git_last_commit_date: 2022-04-26 10:54:46 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: graph
Version: 1.75.0
Command: rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh graph_1.75.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R graph.buildbin-libdir
StartedAt: 2022-06-23 23:40:28 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 23:40:46 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 17.9 seconds
RetCode: 0
Status:   OK  
PackageFile: graph_1.75.0.tgz
PackageFileSize: 1.876 MiB

Command output

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###
### Running command:
###
###   rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh graph_1.75.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R graph.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=graph.buildbin-libdir graph_1.75.0.tar.gz'
>>>>>>> 

* installing *source* package ‘graph’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c graph.c -o graph.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-3.16-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR graph.buildbin-libdir/graph/libs/BioC_graph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "graph.buildbin-libdir/graph/libs/BioC_graph.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "graph.buildbin-libdir/graph/libs/BioC_graph.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "graph.buildbin-libdir/graph/libs/BioC_graph.so"