Back to Multiple platform build/check report for BioC 3.16
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-07-01 11:04:53 -0400 (Fri, 01 Jul 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4147
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4159
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for distinct on nebbiolo2


To the developers/maintainers of the distinct package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/distinct.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 534/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
distinct 1.9.0  (landing page)
Simone Tiberi
Snapshot Date: 2022-06-30 14:00:04 -0400 (Thu, 30 Jun 2022)
git_url: https://git.bioconductor.org/packages/distinct
git_branch: master
git_last_commit: f048022
git_last_commit_date: 2022-04-26 12:04:11 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: distinct
Version: 1.9.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL distinct
StartedAt: 2022-06-30 15:27:05 -0400 (Thu, 30 Jun 2022)
EndedAt: 2022-06-30 15:28:30 -0400 (Thu, 30 Jun 2022)
EllapsedTime: 84.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL distinct
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/library’
* installing *source* package ‘distinct’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Perm.cpp -o Perm.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Perm_covariates.cpp -o Perm_covariates.o
In file included from /home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast.h:5,
                 from Perm_covariates.cpp:2:
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  553 |     #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  604 |     #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  621 |       #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  639 |           #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  654 |       #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  669 |           #pragma omp parallel for
      | 
Perm_covariates.cpp: In function ‘arma::vec my_rint_reg(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)’:
Perm_covariates.cpp:189:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  189 |   for(int i=0;i<p;i++)
      |               ~^~
Perm_covariates.cpp:210:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  210 |   while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
      |         ~~~^~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Perm_covariates_parallel.cpp -o Perm_covariates_parallel.o
In file included from /home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast.h:5,
                 from Perm_covariates_parallel.cpp:2:
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:553: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  553 |     #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:604: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  604 |     #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:621: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  621 |       #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:639: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  639 |           #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:654: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  654 |       #pragma omp parallel for
      | 
/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include/Rfast/matrix.hpp:669: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
  669 |           #pragma omp parallel for
      | 
Perm_covariates_parallel.cpp: In function ‘arma::vec my_rint_reg_parallel(const mat&, const vec&, Rcpp::IntegerVector, const unsigned int&, const unsigned int&, const double&, const unsigned int&)’:
Perm_covariates_parallel.cpp:189:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  189 |   for(int i=0;i<p;i++)
      |               ~^~
Perm_covariates_parallel.cpp:210:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
  210 |   while(i++<maxiters && sum(abs(b2-b1.col(0))) > tol) {
      |         ~~~^~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c Perm_parallel.cpp -o Perm_parallel.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.16-bioc/R/library/Rfast/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o distinct.so Perm.o Perm_covariates.o Perm_covariates_parallel.o Perm_parallel.o RcppExports.o -L/home/biocbuild/bbs-3.16-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.16-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/library/00LOCK-distinct/00new/distinct/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (distinct)