Pierrick Roger
| Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: devel |
| git_last_commit: 8651955 |
| git_last_commit_date: 2023-10-24 11:38:18 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:40:22 -0400 (Thu, 28 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 201/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.9.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: biodbHmdb |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library --no-vignettes --timings biodbHmdb_1.9.0.tar.gz |
| StartedAt: 2024-03-28 03:18:24 -0000 (Thu, 28 Mar 2024) |
| EndedAt: 2024-03-28 03:19:50 -0000 (Thu, 28 Mar 2024) |
| EllapsedTime: 85.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library --no-vignettes --timings biodbHmdb_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2024-03-19 r86153)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... WARNING
Found the following significant warnings:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
See ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++ (GCC) 10.3.1’
* checking installed package size ... NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
libs 8.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 3 NOTEs
See
‘/home/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
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###
### Running command:
###
### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor ‘EntryMaker::EntryMaker()’:
EntryMaker.hpp:23:21: warning: ‘EntryMaker::accession_tag’ will be initialized after [-Wreorder]
23 | TagDetector accession_tag;
| ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning: ‘bool EntryMaker::closed’ [-Wreorder]
22 | bool closed;
| ^~~~~~
EntryMaker.cpp:5:1: warning: when initialized here [-Wreorder]
5 | EntryMaker::EntryMaker() :
| ^~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/testthat/include' -I/usr/local/include -fPIC -g -O2 -Wall -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4-devel-2024.03.20/lib -L/usr/local/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -L/home/biocbuild/R/R-4.4-devel-2024.03.20/lib -lR
installing to /home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-03-28 03:19:10.910][biodb::testContext]
biodb.INFO [2024-03-28 03:19:10.913][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:10.914][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-03-28 03:19:10.916][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:10.917][biodb::testContext]
biodb.INFO [2024-03-28 03:19:10.919][biodb::testThat]
biodb.INFO [2024-03-28 03:19:10.920][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-03-28 03:19:10.921][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:10.923][biodb::testThat]
biodb.INFO [2024-03-28 03:19:11.053][biodb::testContext]
biodb.INFO [2024-03-28 03:19:11.054][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:11.056][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-03-28 03:19:11.057][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:11.058][biodb::testContext]
biodb.INFO [2024-03-28 03:19:11.068][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-28 03:19:11.081][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-03-28 03:19:11.091][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:11.092][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-28 03:19:11.094][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-28 03:19:11.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.098][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-28 03:19:11.124][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-28 03:19:11.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.129][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-28 03:19:11.130][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-28 03:19:11.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.135][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-28 03:19:11.136][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-28 03:19:11.138][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-28 03:19:11.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.143][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-28 03:19:11.144][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-28 03:19:11.146][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-28 03:19:11.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.150][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-28 03:19:11.152][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-28 03:19:11.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.157][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-28 03:19:11.158][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-28 03:19:11.160][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-28 03:19:11.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.164][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-28 03:19:11.166][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-28 03:19:11.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.171][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-28 03:19:11.172][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-28 03:19:11.173][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-28 03:19:11.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.178][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-28 03:19:11.180][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-28 03:19:11.181][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-28 03:19:11.183][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-28 03:19:11.184][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-28 03:19:11.185][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-28 03:19:11.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.190][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-28 03:19:11.192][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-28 03:19:11.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.197][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-28 03:19:11.199][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-28 03:19:11.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.204][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-28 03:19:11.205][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-28 03:19:11.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.211][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-28 03:19:11.212][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-28 03:19:11.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.217][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-28 03:19:11.219][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-28 03:19:11.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.224][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-28 03:19:11.225][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-28 03:19:11.230][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-28 03:19:11.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.235][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-28 03:19:11.237][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-28 03:19:11.238][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-28 03:19:11.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.247][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-28 03:19:11.295][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.318][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-28 03:19:11.320][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.322][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:11.333][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.335][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.336][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.338][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.339][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-28 03:19:11.340][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:11.342][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.343][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-28 03:19:11.345][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:11.346][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.348][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.349][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:11.349][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-28 03:19:11.349][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-28 03:19:11.349][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-28 03:19:11.349][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-28 03:19:11.351][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:11.352][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.353][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.355][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:11.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.357][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.359][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.360][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.362][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:11.363][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:11.364][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.366][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.368][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-28 03:19:11.370][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.372][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-28 03:19:11.373][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.375][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:11.376][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.378][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.379][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.380][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.382][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-28 03:19:11.383][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:11.385][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.386][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-28 03:19:11.388][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:11.389][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.391][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.392][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:11.392][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-28 03:19:11.392][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-28 03:19:11.392][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-28 03:19:11.392][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-28 03:19:11.393][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:11.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.398][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:11.399][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.404][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.405][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:11.407][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:11.408][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.410][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.411][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-28 03:19:11.414][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.415][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-28 03:19:11.417][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.418][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:11.420][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.421][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.423][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.424][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.426][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-28 03:19:11.427][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:11.429][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.430][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-28 03:19:11.432][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:11.433][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.435][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.436][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.438][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:11.439][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.440][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.442][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:11.443][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.445][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.446][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.447][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.449][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:11.450][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:11.452][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.453][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.455][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-28 03:19:11.457][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.459][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-28 03:19:11.460][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.462][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:11.464][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.465][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.467][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.468][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.470][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-28 03:19:11.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:11.473][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.474][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-28 03:19:11.476][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:11.477][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.479][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:11.480][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.482][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:11.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.484][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.486][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:11.487][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:11.489][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:11.490][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:11.491][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.493][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:11.494][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:11.495][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:11.497][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:11.502][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:11.503][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.621][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-28 03:19:11.627][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-28 03:19:11.629][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-28 03:19:11.631][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-28 03:19:11.634][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-28 03:19:11.636][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-28 03:19:11.638][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-28 03:19:11.640][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-28 03:19:11.642][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-28 03:19:11.644][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-28 03:19:11.646][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-28 03:19:11.648][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-28 03:19:11.650][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-28 03:19:11.652][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-28 03:19:11.655][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-28 03:19:11.657][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-28 03:19:11.659][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-28 03:19:11.661][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-28 03:19:11.663][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-28 03:19:11.665][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-28 03:19:11.667][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-28 03:19:11.669][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-28 03:19:11.671][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-28 03:19:11.673][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-28 03:19:11.676][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-28 03:19:11.678][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-28 03:19:11.680][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-28 03:19:11.682][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-28 03:19:11.684][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-28 03:19:11.686][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-28 03:19:11.688][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-28 03:19:11.690][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-28 03:19:11.692][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-28 03:19:11.694][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-28 03:19:11.696][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-28 03:19:11.698][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-28 03:19:11.700][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-28 03:19:11.702][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-28 03:19:11.705][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-28 03:19:11.707][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-28 03:19:11.709][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-28 03:19:11.711][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-28 03:19:11.713][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-28 03:19:11.715][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-28 03:19:11.717][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-28 03:19:11.719][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-28 03:19:11.721][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-28 03:19:11.723][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-28 03:19:11.725][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-28 03:19:11.728][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-28 03:19:11.730][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-28 03:19:11.732][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-28 03:19:11.734][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-28 03:19:11.736][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-28 03:19:11.738][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-28 03:19:11.740][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-28 03:19:11.742][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-28 03:19:11.744][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-28 03:19:11.746][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-28 03:19:11.749][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-28 03:19:11.751][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-28 03:19:11.753][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-28 03:19:11.755][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-28 03:19:11.757][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-28 03:19:11.759][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-28 03:19:11.761][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-28 03:19:11.763][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-28 03:19:11.765][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-28 03:19:11.767][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-28 03:19:11.769][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-28 03:19:11.772][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-28 03:19:11.774][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-28 03:19:11.776][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-28 03:19:11.778][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-28 03:19:11.780][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-28 03:19:11.782][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-28 03:19:11.784][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-28 03:19:11.786][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-28 03:19:11.788][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-28 03:19:11.790][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-28 03:19:11.793][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-28 03:19:11.795][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-28 03:19:11.797][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-28 03:19:11.805][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-28 03:19:11.808][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-28 03:19:11.812][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:11.814][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.817][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:11.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:11.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:11.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:11.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:11.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:11.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:11.991][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-28 03:19:12.006][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:12.010][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:12.012][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-28 03:19:12.014][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:12.015][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:12.017][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:12.018][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-28 03:19:12.020][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:12.021][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:12.022][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-28 03:19:12.024][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:12.025][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:12.027][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-28 03:19:12.028][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-28 03:19:12.030][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-28 03:19:12.032][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:12.033][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:12.033][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-28 03:19:12.033][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-28 03:19:12.034][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-28 03:19:12.036][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:12.037][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:12.038][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:12.040][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:12.041][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:12.042][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:12.044][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-28 03:19:12.044][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-28 03:19:12.045][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:12.047][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:12.048][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:12.049][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:12.058][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-28 03:19:12.060][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-28 03:19:12.062][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-28 03:19:12.064][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-28 03:19:12.067][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-28 03:19:12.097][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:12.098][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-28 03:19:12.154][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:12.159][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:12.165][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:12.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:12.168][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-28 03:19:12.170][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-28 03:19:12.171][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-28 03:19:12.171][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-28 03:19:12.173][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:12.174][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:12.175][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-28 03:19:12.176][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-28 03:19:12.178][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:12.204][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:12.206][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:12.207][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:12.209][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:12.211][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:12.213][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-28 03:19:12.223][biodb::testThat]
biodb.INFO [2024-03-28 03:19:12.225][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-03-28 03:19:12.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:12.227][biodb::testThat]
biodb.TRACE[2024-03-28 03:19:12.233][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-03-28 03:19:12.236][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:12.241][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:12.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:12.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:12.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:12.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:12.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:12.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:12.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:12.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:12.280][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:12.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.282][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:12.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.307][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.308][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.311][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.355][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.357][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.360][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.362][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.367][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.369][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.372][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.374][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.395][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.402][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.404][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.406][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.414][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.416][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.418][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.430][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.438][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.440][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.442][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.450][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.451][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.454][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:12.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:12.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.466][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:12.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.477][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.489][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.498][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.501][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.508][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.512][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.520][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:12.521][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:12.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.524][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.526][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:12.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:12.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:12.533][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:12.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.535][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.543][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:12.545][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.548][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:12.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:12.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.629][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.652][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.657][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:12.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:12.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:12.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:12.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:12.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:12.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:12.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:12.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:12.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:12.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:12.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:12.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:12.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:12.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.879][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.884][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.890][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:12.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:12.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:12.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:12.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:12.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:12.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:12.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.006][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.017][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:13.057][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-28 03:19:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-28 03:19:13.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-28 03:19:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-28 03:19:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-28 03:19:13.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-28 03:19:13.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-28 03:19:13.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-28 03:19:13.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-28 03:19:13.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.163][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.175][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:13.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.222][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.257][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.258][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.261][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.262][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.296][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.297][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.300][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:13.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.377][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.422][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.424][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.427][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:13.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:13.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:13.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.463][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:13.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:13.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.467][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:13.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:13.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:13.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:13.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.491][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:13.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:13.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.497][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:13.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:13.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.503][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:13.504][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:13.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.507][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.508][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:13.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:13.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:13.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:13.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:13.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:13.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.541][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:13.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:13.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.563][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.568][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.579][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.581][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.583][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.633][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.669][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.670][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.673][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.711][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.712][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.715][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.750][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.751][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.754][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:13.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.789][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:13.790][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:13.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.793][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:13.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:13.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:13.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:13.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:13.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:13.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:13.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.841][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.880][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:13.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.899][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.916][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.917][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.920][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.937][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:13.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:13.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.948][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.950][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:13.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.952][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.959][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.960][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:13.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.963][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:13.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.974][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.980][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.982][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:13.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.985][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:13.991][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.992][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:13.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:13.995][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.006][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.012][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.014][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.023][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:14.033][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:14.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.044][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:14.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:14.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.048][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.055][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:14.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:14.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.059][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.070][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.079][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.082][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.093][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.110][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.121][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.128][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.129][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.132][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:14.140][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:14.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.143][ef$get] fields variable is a list.
biodb.INFO [2024-03-28 03:19:14.153][biodb::testThat]
biodb.INFO [2024-03-28 03:19:14.155][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-28 03:19:14.157][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:14.158][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:14.180][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-28 03:19:14.189][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-28 03:19:14.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:14.196][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-28 03:19:14.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-28 03:19:14.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-28 03:19:14.204][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-28 03:19:14.206][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-28 03:19:14.249][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:14.251][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:14.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:14.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:14.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:14.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:14.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:14.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:14.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:14.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.276][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.283][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.284][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.287][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.294][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.295][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.298][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.305][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.307][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.309][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.320][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.328][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.329][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.332][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.339][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.343][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.355][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.362][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.364][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.374][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.375][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.385][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:14.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:14.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.389][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:14.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:14.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:14.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.400][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:14.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.408][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.409][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.412][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.422][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.424][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.432][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.451][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:14.453][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.468][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:14.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:14.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.472][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.481][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:14.483][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.486][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.488][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.512][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.524][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:14.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:14.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:14.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:14.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:14.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:14.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:14.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.641][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:14.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.660][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:14.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:14.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:14.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:14.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:14.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:14.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:14.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:14.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.797][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:14.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:14.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:14.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:14.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.820][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:14.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:14.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:14.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:14.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:14.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:14.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:14.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:14.946][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-28 03:19:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-28 03:19:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-28 03:19:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-28 03:19:14.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-28 03:19:14.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-28 03:19:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-28 03:19:14.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-28 03:19:14.975][biodb::testThat]
biodb.INFO [2024-03-28 03:19:14.976][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-28 03:19:14.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:14.979][biodb::testThat]
biodb.TRACE[2024-03-28 03:19:14.984][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:14.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:14.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:14.989][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:14.990][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-03-28 03:19:15.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.045][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-03-28 03:19:15.055][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-28 03:19:15.057][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-28 03:19:15.058][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-28 03:19:15.060][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.062][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.064][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:15.066][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.067][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:15.069][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:15.071][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:15.072][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:15.073][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:15.075][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:15.076][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-28 03:19:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.090][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.101][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:15.102][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:15.103][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-28 03:19:15.118][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.120][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.122][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.124][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-03-28 03:19:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.144][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.158][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-03-28 03:19:15.242][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-28 03:19:15.244][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-28 03:19:15.245][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-28 03:19:15.266][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.268][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.270][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:15.272][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.273][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:15.296][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:15.297][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:15.299][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:15.300][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:15.301][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:15.303][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-28 03:19:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.316][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:15.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.328][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:15.329][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:15.330][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-28 03:19:15.346][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.348][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.350][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.352][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-03-28 03:19:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.390][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-03-28 03:19:15.392][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-03-28 03:19:15.393][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-28 03:19:15.395][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-28 03:19:15.397][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.399][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.401][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:15.403][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.405][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:15.415][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:15.416][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:15.418][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:15.419][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:15.421][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:15.422][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-28 03:19:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.437][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.449][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:15.452][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:15.453][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-03-28 03:19:15.474][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.475][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-03-28 03:19:15.477][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:15.478][biodb::testThat]
biodb.TRACE[2024-03-28 03:19:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.526][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-28 03:19:15.528][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-28 03:19:15.529][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-28 03:19:15.531][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.534][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.536][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:15.538][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:15.539][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:15.541][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:15.543][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:15.544][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:15.545][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:15.547][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:15.548][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-28 03:19:15.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:15.575][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:15.576][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-03-28 03:19:15.597][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.598][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-03-28 03:19:15.600][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:15.601][biodb::testThat]
biodb.TRACE[2024-03-28 03:19:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.651][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-28 03:19:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-28 03:19:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.657][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-28 03:19:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-28 03:19:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-28 03:19:15.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-28 03:19:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-28 03:19:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-28 03:19:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-28 03:19:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-28 03:19:15.755][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.756][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-28 03:19:15.758][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:15.759][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.770][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.772][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-28 03:19:15.773][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:15.775][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.785][biodb::testThat]
biodb.INFO [2024-03-28 03:19:15.787][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-28 03:19:15.788][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:15.790][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:15.795][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-03-28 03:19:37.458][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-03-28 03:19:39.386][biodb::testThat]
biodb.INFO [2024-03-28 03:19:39.387][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-28 03:19:39.389][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:39.390][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:42.423][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-03-28 03:19:42.938][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:42.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:42.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:42.942][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:42.943][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:42.945][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:42.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:42.947][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:42.949][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:42.950][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:42.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:42.953][ef$get] fields variable is a list.
biodb.INFO [2024-03-28 03:19:42.955][biodb::testThat]
biodb.INFO [2024-03-28 03:19:42.956][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-03-28 03:19:42.958][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:42.959][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:42.962][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-03-28 03:19:43.031][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-28 03:19:43.033][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.035][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-28 03:19:43.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-03-28 03:19:43.062][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-28 03:19:43.071][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-28 03:19:43.073][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-28 03:19:43.075][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.077][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:43.079][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:43.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:43.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:43.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:43.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:43.144][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-28 03:19:43.145][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-03-28 03:19:43.167][biodb::testThat]
biodb.INFO [2024-03-28 03:19:43.168][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-03-28 03:19:43.170][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:43.171][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:43.181][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-03-28 03:19:43.183][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-03-28 03:19:43.184][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-28 03:19:43.186][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.188][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-28 03:19:43.191][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-03-28 03:19:43.193][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-28 03:19:43.194][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-28 03:19:43.196][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-28 03:19:43.198][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.200][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:43.201][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:43.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:43.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:43.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:43.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:43.255][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.261][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:43.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:43.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:43.300][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-28 03:19:43.301][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-03-28 03:19:43.303][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-03-28 03:19:43.320][biodb::testThat]
biodb.INFO [2024-03-28 03:19:43.321][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-03-28 03:19:43.323][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:43.324][biodb::testThat]
biodb.INFO [2024-03-28 03:19:43.354][biodb::testThat]
biodb.INFO [2024-03-28 03:19:43.356][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-03-28 03:19:43.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:43.358][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:43.361][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.364][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.366][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:43.368][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.369][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:43.371][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:43.373][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:43.374][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:43.375][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-03-28 03:19:43.386][biodb::testThat]
biodb.INFO [2024-03-28 03:19:43.387][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-03-28 03:19:43.389][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:43.390][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:43.393][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.395][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.397][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:43.399][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:43.401][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:43.403][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:43.412][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:43.414][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:43.415][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-03-28 03:19:43.428][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:43.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:43.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.433][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.434][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:43.436][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:43.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.438][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:43.440][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:43.441][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:43.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:43.444][ef$get] fields variable is a list.
biodb.INFO [2024-03-28 03:19:43.446][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-28 03:19:43.447][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-28 03:19:43.459][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-28 03:19:43.460][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-28 03:19:43.461][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:43.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:43.464][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.466][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-28 03:19:43.473][biodb::testContext]
biodb.INFO [2024-03-28 03:19:43.474][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:43.475][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-03-28 03:19:43.477][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:43.478][biodb::testContext]
biodb.INFO [2024-03-28 03:19:43.483][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-28 03:19:43.485][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-03-28 03:19:43.490][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:43.492][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-28 03:19:43.493][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-28 03:19:43.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.499][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-28 03:19:43.500][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-28 03:19:43.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.506][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-28 03:19:43.507][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-28 03:19:43.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.512][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-28 03:19:43.514][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-28 03:19:43.515][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-28 03:19:43.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.521][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-28 03:19:43.522][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-28 03:19:43.524][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-28 03:19:43.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.529][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-28 03:19:43.530][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-28 03:19:43.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.536][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-28 03:19:43.537][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-28 03:19:43.539][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-28 03:19:43.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.544][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-28 03:19:43.545][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-28 03:19:43.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.551][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-28 03:19:43.552][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-28 03:19:43.554][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-28 03:19:43.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.559][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-28 03:19:43.560][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-28 03:19:43.562][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-28 03:19:43.563][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-28 03:19:43.565][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-28 03:19:43.575][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-28 03:19:43.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.581][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-28 03:19:43.583][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-28 03:19:43.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.589][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-28 03:19:43.590][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-28 03:19:43.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.596][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-28 03:19:43.598][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-28 03:19:43.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.603][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-28 03:19:43.605][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-28 03:19:43.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.611][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-28 03:19:43.612][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-28 03:19:43.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.618][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-28 03:19:43.620][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-28 03:19:43.625][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-28 03:19:43.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.631][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-28 03:19:43.632][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-28 03:19:43.634][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-28 03:19:43.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.640][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-28 03:19:43.643][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.645][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-28 03:19:43.646][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.648][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:43.649][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.650][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.652][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.653][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.655][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-28 03:19:43.656][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:43.657][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.659][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-28 03:19:43.660][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:43.662][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.663][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.664][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:43.664][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-28 03:19:43.664][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-28 03:19:43.664][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-28 03:19:43.664][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-28 03:19:43.666][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:43.667][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.670][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:43.671][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.672][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.674][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.675][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.676][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:43.678][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:43.679][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.680][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.682][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-28 03:19:43.684][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.686][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-28 03:19:43.687][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:43.690][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.693][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.694][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.696][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-28 03:19:43.697][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:43.698][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.700][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-28 03:19:43.701][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:43.702][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.704][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.705][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:43.705][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-28 03:19:43.705][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-28 03:19:43.705][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-28 03:19:43.705][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-28 03:19:43.707][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:43.708][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.709][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.711][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:43.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.713][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.714][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.716][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.717][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:43.718][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:43.720][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.721][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.723][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-28 03:19:43.725][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.727][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-28 03:19:43.735][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.737][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:43.739][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.740][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.741][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.743][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.744][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-28 03:19:43.746][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:43.747][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.748][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-28 03:19:43.750][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:43.751][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.752][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.754][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.755][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:43.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:43.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.763][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.764][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.765][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:43.767][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:43.768][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.769][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.771][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-28 03:19:43.774][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.775][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-28 03:19:43.776][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.778][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:43.779][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.780][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.782][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.783][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.784][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-28 03:19:43.786][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:43.787][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.789][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-28 03:19:43.790][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:43.791][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.793][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:43.794][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.795][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:43.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.799][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:43.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:43.802][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:43.803][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:43.804][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.806][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:43.807][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:43.808][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:43.810][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:43.811][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:43.813][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:43.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:43.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:43.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:43.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:43.927][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-28 03:19:43.929][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-28 03:19:43.931][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-28 03:19:43.933][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-28 03:19:43.935][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-28 03:19:43.937][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-28 03:19:43.939][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-28 03:19:43.941][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-28 03:19:43.943][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-28 03:19:43.945][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-28 03:19:43.946][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-28 03:19:43.948][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-28 03:19:43.950][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-28 03:19:43.952][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-28 03:19:43.954][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-28 03:19:43.956][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-28 03:19:43.958][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-28 03:19:43.960][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-28 03:19:43.962][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-28 03:19:43.964][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-28 03:19:43.966][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-28 03:19:43.968][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-28 03:19:43.970][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-28 03:19:43.972][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-28 03:19:43.974][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-28 03:19:43.976][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-28 03:19:43.978][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-28 03:19:43.983][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-28 03:19:43.986][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-28 03:19:43.989][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-28 03:19:43.991][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-28 03:19:43.993][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-28 03:19:43.995][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-28 03:19:43.997][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-28 03:19:44.000][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-28 03:19:44.002][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-28 03:19:44.004][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-28 03:19:44.006][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-28 03:19:44.008][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-28 03:19:44.010][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-28 03:19:44.013][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-28 03:19:44.015][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-28 03:19:44.017][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-28 03:19:44.019][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-28 03:19:44.021][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-28 03:19:44.023][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-28 03:19:44.026][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-28 03:19:44.029][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-28 03:19:44.031][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-28 03:19:44.050][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-28 03:19:44.052][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-28 03:19:44.055][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-28 03:19:44.057][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-28 03:19:44.059][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-28 03:19:44.061][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-28 03:19:44.063][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-28 03:19:44.066][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-28 03:19:44.068][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-28 03:19:44.070][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-28 03:19:44.072][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-28 03:19:44.075][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-28 03:19:44.077][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-28 03:19:44.079][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-28 03:19:44.081][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-28 03:19:44.083][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-28 03:19:44.086][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-28 03:19:44.088][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-28 03:19:44.090][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-28 03:19:44.092][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-28 03:19:44.094][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-28 03:19:44.096][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-28 03:19:44.098][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-28 03:19:44.100][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-28 03:19:44.102][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-28 03:19:44.104][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-28 03:19:44.106][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-28 03:19:44.109][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-28 03:19:44.111][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-28 03:19:44.113][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-28 03:19:44.115][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-28 03:19:44.123][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-28 03:19:44.125][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-28 03:19:44.127][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-28 03:19:44.129][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-28 03:19:44.131][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-28 03:19:44.133][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:44.134][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.137][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.183][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:44.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:44.294][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-28 03:19:44.296][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:44.299][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:44.300][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-28 03:19:44.301][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:44.303][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:44.304][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:44.305][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-28 03:19:44.307][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:44.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:44.310][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-28 03:19:44.311][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:44.312][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:44.314][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-28 03:19:44.315][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-28 03:19:44.316][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-28 03:19:44.318][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:44.319][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:44.319][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-28 03:19:44.319][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-28 03:19:44.321][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-28 03:19:44.322][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:44.323][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:44.325][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:44.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:44.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:44.329][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:44.330][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-28 03:19:44.330][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-28 03:19:44.332][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:44.333][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:44.335][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:44.336][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:44.338][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-28 03:19:44.340][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-28 03:19:44.343][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-28 03:19:44.345][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-28 03:19:44.356][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-28 03:19:44.361][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:44.363][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-28 03:19:44.365][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:44.367][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:44.369][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:44.370][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:44.372][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-28 03:19:44.374][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-28 03:19:44.375][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-28 03:19:44.375][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-28 03:19:44.377][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:44.378][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:44.379][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-28 03:19:44.380][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-28 03:19:44.382][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:44.384][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:44.386][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:44.388][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:44.390][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:44.391][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:44.393][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-28 03:19:44.395][biodb::testThat]
biodb.INFO [2024-03-28 03:19:44.396][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-03-28 03:19:44.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:44.399][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:44.404][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:44.407][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:44.409][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:44.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:44.412][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:44.414][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:44.416][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:44.417][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:44.419][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:44.423][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-03-28 03:19:44.430][biodb::testThat]
biodb.INFO [2024-03-28 03:19:44.432][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-03-28 03:19:44.433][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:44.434][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:44.437][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-28 03:19:44.438][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-28 03:19:44.440][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:44.442][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-28 03:19:44.445][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-28 03:19:44.447][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-28 03:19:44.450][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-28 03:19:44.452][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-28 03:19:44.453][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:44.455][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:44.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:44.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:44.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:44.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:44.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:44.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:44.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:44.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:44.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.478][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.486][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.487][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.490][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.497][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.499][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.502][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.509][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.511][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.522][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.524][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.534][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.541][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.543][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.545][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.553][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.554][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.557][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.576][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.577][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.580][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.587][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.589][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.591][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.599][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:44.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:44.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.603][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:44.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:44.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:44.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:44.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.614][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:44.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.639][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.646][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:44.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:44.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.650][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.658][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:44.659][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.662][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:44.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:44.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.682][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.689][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:44.691][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.734][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:44.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:44.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:44.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:44.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:44.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:44.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.991][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:45.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:45.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:45.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:45.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:45.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.041][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:45.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:45.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:45.139][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-28 03:19:45.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:45.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:45.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:45.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-28 03:19:45.164][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-28 03:19:45.166][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-28 03:19:45.167][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-28 03:19:45.169][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-28 03:19:45.170][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.172][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.175][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-28 03:19:45.181][biodb::testContext]
biodb.INFO [2024-03-28 03:19:45.182][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:45.183][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-03-28 03:19:45.185][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-28 03:19:45.186][biodb::testContext]
biodb.INFO [2024-03-28 03:19:45.191][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-28 03:19:45.193][self$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-03-28 03:19:45.198][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:45.199][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-28 03:19:45.200][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-28 03:19:45.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.205][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-28 03:19:45.207][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-28 03:19:45.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.212][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-28 03:19:45.213][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-28 03:19:45.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.219][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-28 03:19:45.220][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-28 03:19:45.221][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-28 03:19:45.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.226][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-28 03:19:45.228][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-28 03:19:45.229][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-28 03:19:45.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.234][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-28 03:19:45.236][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-28 03:19:45.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.242][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-28 03:19:45.243][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-28 03:19:45.244][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-28 03:19:45.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.249][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-28 03:19:45.251][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-28 03:19:45.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.256][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-28 03:19:45.258][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-28 03:19:45.259][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-28 03:19:45.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.273][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-28 03:19:45.274][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-28 03:19:45.276][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-28 03:19:45.277][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-28 03:19:45.279][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-28 03:19:45.280][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-28 03:19:45.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.285][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-28 03:19:45.286][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-28 03:19:45.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.291][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-28 03:19:45.293][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-28 03:19:45.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.298][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-28 03:19:45.300][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-28 03:19:45.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.305][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-28 03:19:45.306][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-28 03:19:45.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.311][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-28 03:19:45.313][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-28 03:19:45.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.318][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-28 03:19:45.319][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-28 03:19:45.324][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-28 03:19:45.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.330][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-28 03:19:45.331][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-28 03:19:45.333][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-28 03:19:45.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.338][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-28 03:19:45.340][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.342][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-28 03:19:45.343][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.345][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:45.346][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.348][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.349][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.350][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.352][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-28 03:19:45.353][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:45.355][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.356][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-28 03:19:45.357][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:45.359][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.360][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.362][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:45.362][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-28 03:19:45.362][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-28 03:19:45.362][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-28 03:19:45.362][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-28 03:19:45.363][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:45.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.366][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.367][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:45.368][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.370][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.371][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.372][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.374][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:45.375][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:45.376][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.378][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.379][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-28 03:19:45.382][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.383][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-28 03:19:45.385][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.386][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:45.388][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.389][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.390][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.392][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.393][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-28 03:19:45.394][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:45.396][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.397][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-28 03:19:45.399][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:45.400][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.401][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.403][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:45.403][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-28 03:19:45.403][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-28 03:19:45.403][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-28 03:19:45.403][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-28 03:19:45.404][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:45.406][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.407][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.408][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:45.410][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.411][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.412][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.421][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.423][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:45.424][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:45.425][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.427][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.429][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-28 03:19:45.431][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.433][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-28 03:19:45.434][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.435][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:45.437][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.438][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.440][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.442][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.443][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-28 03:19:45.445][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:45.446][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.447][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-28 03:19:45.449][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:45.450][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.452][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.453][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.454][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:45.456][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.457][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.458][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:45.460][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.461][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.462][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.464][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.465][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:45.466][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:45.468][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.469][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.471][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-28 03:19:45.473][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.474][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-28 03:19:45.476][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.477][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:45.479][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.480][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.481][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.483][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.484][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-28 03:19:45.486][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:45.487][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.488][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-28 03:19:45.490][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:45.491][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.493][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.494][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.495][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-28 03:19:45.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.499][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:45.501][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:45.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:45.503][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.505][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.506][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:45.507][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:45.509][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.510][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:45.512][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:45.513][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.632][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-28 03:19:45.634][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-28 03:19:45.636][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-28 03:19:45.639][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-28 03:19:45.641][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-28 03:19:45.643][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-28 03:19:45.646][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-28 03:19:45.648][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-28 03:19:45.650][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-28 03:19:45.652][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-28 03:19:45.654][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-28 03:19:45.657][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-28 03:19:45.659][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-28 03:19:45.661][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-28 03:19:45.663][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-28 03:19:45.665][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-28 03:19:45.667][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-28 03:19:45.669][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-28 03:19:45.671][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-28 03:19:45.673][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-28 03:19:45.675][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-28 03:19:45.677][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-28 03:19:45.680][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-28 03:19:45.682][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-28 03:19:45.684][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-28 03:19:45.686][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-28 03:19:45.688][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-28 03:19:45.690][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-28 03:19:45.692][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-28 03:19:45.694][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-28 03:19:45.696][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-28 03:19:45.698][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-28 03:19:45.700][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-28 03:19:45.702][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-28 03:19:45.705][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-28 03:19:45.707][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-28 03:19:45.709][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-28 03:19:45.719][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-28 03:19:45.721][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-28 03:19:45.724][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-28 03:19:45.726][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-28 03:19:45.728][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-28 03:19:45.730][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-28 03:19:45.732][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-28 03:19:45.735][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-28 03:19:45.737][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-28 03:19:45.739][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-28 03:19:45.741][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-28 03:19:45.743][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-28 03:19:45.745][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-28 03:19:45.747][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-28 03:19:45.749][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-28 03:19:45.751][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-28 03:19:45.753][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-28 03:19:45.755][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-28 03:19:45.757][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-28 03:19:45.759][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-28 03:19:45.761][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-28 03:19:45.763][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-28 03:19:45.765][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-28 03:19:45.767][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-28 03:19:45.769][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-28 03:19:45.771][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-28 03:19:45.774][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-28 03:19:45.776][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-28 03:19:45.778][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-28 03:19:45.780][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-28 03:19:45.782][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-28 03:19:45.784][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-28 03:19:45.786][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-28 03:19:45.788][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-28 03:19:45.790][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-28 03:19:45.792][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-28 03:19:45.794][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-28 03:19:45.796][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-28 03:19:45.798][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-28 03:19:45.800][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-28 03:19:45.802][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-28 03:19:45.804][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-28 03:19:45.806][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-28 03:19:45.809][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-28 03:19:45.811][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-28 03:19:45.813][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-28 03:19:45.815][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-28 03:19:45.817][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-28 03:19:45.818][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-28 03:19:45.820][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.822][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.934][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-28 03:19:45.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:45.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:45.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:45.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:45.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:45.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:45.987][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-28 03:19:45.989][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:45.992][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.993][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-28 03:19:45.995][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:45.996][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-28 03:19:45.998][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:45.999][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-28 03:19:46.000][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:46.002][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-28 03:19:46.003][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-28 03:19:46.005][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-28 03:19:46.014][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:46.016][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-28 03:19:46.017][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-28 03:19:46.019][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-28 03:19:46.020][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-28 03:19:46.022][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-28 03:19:46.022][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-28 03:19:46.022][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-28 03:19:46.023][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-28 03:19:46.025][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:46.026][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:46.027][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-28 03:19:46.029][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-28 03:19:46.030][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-28 03:19:46.031][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-28 03:19:46.033][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-28 03:19:46.033][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-28 03:19:46.034][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:46.035][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:46.037][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-28 03:19:46.038][self$setPropertyValue]
biodb.DEBUG[2024-03-28 03:19:46.040][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-28 03:19:46.042][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-28 03:19:46.044][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-28 03:19:46.047][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-28 03:19:46.049][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-28 03:19:46.053][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:46.055][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-28 03:19:46.057][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:46.059][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:46.061][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:46.062][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:46.064][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-28 03:19:46.066][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-28 03:19:46.067][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-28 03:19:46.067][self$setPropertyValue] Setting property "urls" to "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-28 03:19:46.069][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-28 03:19:46.070][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-28 03:19:46.071][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-28 03:19:46.072][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-28 03:19:46.074][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-28 03:19:46.076][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:46.078][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:46.079][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:46.081][private$addConnectorRules] Create new rule for URL "/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-28 03:19:46.083][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-28 03:19:46.084][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-28 03:19:46.086][biodb::testThat]
biodb.INFO [2024-03-28 03:19:46.087][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-03-28 03:19:46.089][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-28 03:19:46.090][biodb::testThat]
biodb.DEBUG[2024-03-28 03:19:46.093][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-28 03:19:46.094][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-28 03:19:46.095][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-28 03:19:46.100][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:46.102][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:46.104][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:46.106][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:46.107][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:46.109][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:46.110][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:46.112][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:46.113][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:46.114][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:46.116][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-03-28 03:19:46.118][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-28 03:19:46.120][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-28 03:19:46.122][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:46.124][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-28 03:19:46.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-28 03:19:46.129][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-28 03:19:46.131][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-28 03:19:46.133][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-28 03:19:46.135][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:46.136][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:46.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:46.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:46.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:46.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:46.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:46.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:46.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:46.157][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.170][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.179][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.180][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.183][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.191][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.193][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.195][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.204][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.205][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.208][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.220][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.228][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.230][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.241][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.242][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.257][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.266][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.268][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.270][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.278][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.280][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.283][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:46.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:46.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.295][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:46.304][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:46.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.307][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:46.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:46.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.315][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.317][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.328][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.341][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.349][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.353][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.361][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.363][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.365][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:46.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:46.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.377][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:46.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.385][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:46.387][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.390][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.416][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.421][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.445][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:46.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:46.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:46.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:46.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.561][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.567][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.573][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:46.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:46.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.637][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.650][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:46.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.710][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:46.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.745][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:46.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.768][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:46.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:46.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:46.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:46.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:46.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:46.872][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-28 03:19:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:46.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:46.897][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:46.898][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:46.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:46.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:46.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:46.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:46.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:46.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:46.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:46.914][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-28 03:19:46.916][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-28 03:19:46.918][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:46.920][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-28 03:19:46.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-28 03:19:46.925][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-28 03:19:46.928][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-28 03:19:46.929][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-28 03:19:46.931][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-28 03:19:46.933][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-28 03:19:46.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:46.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:46.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:46.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:46.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:46.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:46.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:46.953][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.955][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.958][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.975][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.977][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.980][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.988][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.989][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.992][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.001][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.002][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.005][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.007][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.014][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.017][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.025][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.027][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.029][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.039][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.042][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.044][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.054][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.062][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.063][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.067][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.074][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.076][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.079][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.087][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:47.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.091][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:47.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:47.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:47.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.103][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:47.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:47.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.112][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.115][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.131][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.132][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.135][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.143][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.148][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.155][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.157][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:47.169][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:47.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:47.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.179][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:47.181][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.184][ef$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.186][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-28 03:19:47.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:47.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:47.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.222][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-28 03:19:47.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-28 03:19:47.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.233][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.239][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-28 03:19:47.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-28 03:19:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-28 03:19:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-28 03:19:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-28 03:19:47.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-28 03:19:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-28 03:19:47.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-28 03:19:47.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:47.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:47.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:47.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:47.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-28 03:19:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-28 03:19:47.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-28 03:19:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-28 03:19:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-28 03:19:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:47.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:47.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:47.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:47.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-28 03:19:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:47.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:47.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:47.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-28 03:19:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-28 03:19:47.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.522][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:47.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.545][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-28 03:19:47.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-28 03:19:47.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-28 03:19:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-28 03:19:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.585][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:47.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.605][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-28 03:19:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-28 03:19:47.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-28 03:19:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:47.645][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-28 03:19:47.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.657][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.663][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:47.669][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:47.671][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:47.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:47.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:47.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:47.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:47.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:47.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:47.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:47.693][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-28 03:19:47.694][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-28 03:19:47.696][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-28 03:19:47.698][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:47.700][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:47.702][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:47.704][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:47.705][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:47.707][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:47.709][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:47.710][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:47.711][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:47.713][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:47.714][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-28 03:19:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.728][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.733][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.747][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:47.765][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:47.766][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:47.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:47.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:47.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:47.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:47.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:47.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:47.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:47.821][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-28 03:19:47.823][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:47.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:47.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:47.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:47.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:47.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:47.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:47.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-28 03:19:47.844][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-28 03:19:47.845][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-28 03:19:47.846][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-28 03:19:47.849][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:47.851][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:47.853][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-28 03:19:47.855][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-28 03:19:47.856][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-28 03:19:47.858][private$doListFiles] List files in /home/biocbuild/.cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-28 03:19:47.859][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-28 03:19:47.861][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-28 03:19:47.862][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-28 03:19:47.863][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-28 03:19:47.865][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-28 03:19:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:47.916][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-28 03:19:47.917][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-03-28 03:19:47.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:47.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:47.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:47.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:47.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:47.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:47.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-28 03:19:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.950][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.961][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-28 03:19:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-28 03:19:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-28 03:19:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-28 03:19:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-28 03:19:47.972][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-28 03:19:47.974][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-28 03:19:47.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-28 03:19:47.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:47.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:47.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:47.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:47.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:47.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-28 03:19:47.997][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-28 03:19:47.999][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-28 03:19:48.001][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-28 03:19:48.002][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-28 03:19:48.003][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-28 03:19:48.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-28 03:19:48.006][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-28 03:19:48.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-28 03:19:48.008][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-28 03:19:48.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
12.412 0.328 39.676