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This page was generated on 2022-12-07 11:08:41 -0500 (Wed, 07 Dec 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4423
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-11-30 r83393 ucrt) -- "Unsuffered Consequences" 4193
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4236
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for amplican on merida1


To the developers/maintainers of the amplican package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/amplican.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 46/2155HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.21.0  (landing page)
Eivind Valen
Snapshot Date: 2022-12-06 14:00:17 -0500 (Tue, 06 Dec 2022)
git_url: https://git.bioconductor.org/packages/amplican
git_branch: master
git_last_commit: 5b04ab5
git_last_commit_date: 2022-11-01 11:16:19 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is not available

Summary

Package: amplican
Version: 1.21.0
Command: rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh amplican_1.21.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R amplican.buildbin-libdir
StartedAt: 2022-12-07 08:05:26 -0500 (Wed, 07 Dec 2022)
EndedAt: 2022-12-07 08:07:03 -0500 (Wed, 07 Dec 2022)
EllapsedTime: 96.7 seconds
RetCode: 0
Status:   OK  
PackageFile: amplican_1.21.0.tgz
PackageFileSize: 7.631 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf amplican.buildbin-libdir && mkdir amplican.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh amplican_1.21.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R amplican.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=amplican.buildbin-libdir amplican_1.21.0.tar.gz'
>>>>>>> 

* installing *source* package ‘amplican’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I/usr/local/include    -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I/usr/local/include    -fPIC  -Wall -g -O2  -c bezier.cpp -o bezier.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o amplican.so RcppExports.o bezier.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.17-bioc/meat/amplican.buildbin-libdir/00LOCK-amplican/00new/amplican/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (amplican)


>>>>>>> 
>>>>>>> FIXING LINKS FOR amplican.buildbin-libdir/amplican/libs/amplican.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "amplican.buildbin-libdir/amplican/libs/amplican.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "amplican.buildbin-libdir/amplican/libs/amplican.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "amplican.buildbin-libdir/amplican/libs/amplican.so"