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This page was generated on 2024-05-15 13:46:43 -0400 (Wed, 15 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4663
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1889/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqSQC 1.27.0  (landing page)
Qian Liu
Snapshot Date: 2024-05-13 14:05:07 -0400 (Mon, 13 May 2024)
git_url: https://git.bioconductor.org/packages/SeqSQC
git_branch: devel
git_last_commit: 06f6f25
git_last_commit_date: 2024-04-30 11:02:08 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for SeqSQC on kunpeng2


To the developers/maintainers of the SeqSQC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqSQC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: SeqSQC
Version: 1.26.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data SeqSQC
StartedAt: 2024-05-09 03:34:33 -0000 (Thu, 09 May 2024)
EndedAt: 2024-05-09 03:35:16 -0000 (Thu, 09 May 2024)
EllapsedTime: 43.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data SeqSQC
###
##############################################################################
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* checking for file ‘SeqSQC/DESCRIPTION’ ... OK
* preparing ‘SeqSQC’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rmd’ using rmarkdown

Quitting from lines  at lines 72-73 [loadVfile] (vignette.Rmd)
Error: processing vignette 'vignette.Rmd' failed with diagnostics:
failed to load resource
  name: EH550
  title: DNA-Sequencing dataset from the 1000 Genomes Project
  reason: Invalid block size (208206557) at position (349816444), unexpected end of file.
Log:
  Open a GDS file (File Version: v1.0).
  Consider using 'openfn.gds(, allow.error=TRUE)'.
--- failed re-building ‘vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘vignette.Rmd’

Error: Vignette re-building failed.
Execution halted