Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-04-01 11:04:49 -0400 (Sat, 01 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4551
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4312
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4309
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for MesKit on nebbiolo1


To the developers/maintainers of the MesKit package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MesKit.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 1148/2199HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MesKit 1.9.0  (landing page)
Mengni Liu
Snapshot Date: 2023-03-31 14:00:12 -0400 (Fri, 31 Mar 2023)
git_url: https://git.bioconductor.org/packages/MesKit
git_branch: devel
git_last_commit: 09f7690
git_last_commit_date: 2022-11-01 11:22:30 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: MesKit
Version: 1.9.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MesKit
StartedAt: 2023-03-31 17:04:01 -0400 (Fri, 31 Mar 2023)
EndedAt: 2023-03-31 17:05:05 -0400 (Fri, 31 Mar 2023)
EllapsedTime: 63.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MesKit
###
##############################################################################
##############################################################################


* checking for file ‘MesKit/DESCRIPTION’ ... OK
* preparing ‘MesKit’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MesKit.Rmd’ using rmarkdown
Quitting from lines 434-449 (MesKit.Rmd) 
Error: processing vignette 'MesKit.Rmd' failed with diagnostics:
Failed to download KEGG data. Wrong 'species' or the network is unreachable. The 'species' should be one of organisms listed in 'https://www.genome.jp/kegg/catalog/org_list.html'
--- failed re-building ‘MesKit.Rmd’

SUMMARY: processing the following file failed:
  ‘MesKit.Rmd’

Error: Vignette re-building failed.
Execution halted