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This page was generated on 2022-01-25 11:10:53 -0500 (Tue, 25 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4164
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4059
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4001
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4118
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for EBarrays on merida1


To the developers/maintainers of the EBarrays package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBarrays.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 557/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBarrays 2.59.0  (landing page)
Ming Yuan
Snapshot Date: 2022-01-24 13:55:18 -0500 (Mon, 24 Jan 2022)
git_url: https://git.bioconductor.org/packages/EBarrays
git_branch: master
git_last_commit: f22c4e4
git_last_commit_date: 2021-10-26 11:46:40 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'Biobase' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EBarrays
Version: 2.59.0
Command: rm -rf EBarrays.buildbin-libdir && mkdir EBarrays.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EBarrays_2.59.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EBarrays.buildbin-libdir
StartedAt: 2022-01-25 07:51:29 -0500 (Tue, 25 Jan 2022)
EndedAt: 2022-01-25 07:51:42 -0500 (Tue, 25 Jan 2022)
EllapsedTime: 13.0 seconds
RetCode: 0
Status:   OK  
PackageFile: EBarrays_2.59.0.tgz
PackageFileSize: 1.14 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf EBarrays.buildbin-libdir && mkdir EBarrays.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EBarrays_2.59.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R EBarrays.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EBarrays.buildbin-libdir EBarrays_2.59.0.tar.gz'
>>>>>>> 

* installing *source* package ‘EBarrays’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ebarrays.c -o ebarrays.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EBarrays.so ebarrays.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/EBarrays.buildbin-libdir/00LOCK-EBarrays/00new/EBarrays/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EBarrays)


>>>>>>> 
>>>>>>> FIXING LINKS FOR EBarrays.buildbin-libdir/EBarrays/libs/EBarrays.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "EBarrays.buildbin-libdir/EBarrays/libs/EBarrays.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "EBarrays.buildbin-libdir/EBarrays/libs/EBarrays.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "EBarrays.buildbin-libdir/EBarrays/libs/EBarrays.so"