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This page was generated on 2024-02-18 02:29:42 -0500 (Sun, 18 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4657
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4397
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4424
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4400
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 559/2244HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DiffBind 3.13.0  (landing page)
Rory Stark
Snapshot Date: 2024-02-16 14:10:20 -0500 (Fri, 16 Feb 2024)
git_url: https://git.bioconductor.org/packages/DiffBind
git_branch: devel
git_last_commit: b8c5bbc
git_last_commit_date: 2023-10-24 09:48:02 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

INSTALL results for DiffBind on kunpeng2


To the developers/maintainers of the DiffBind package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DiffBind.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: DiffBind
Version: 3.13.0
Command: /home/biocbuild/R/R-devel_2024-01-16_r85812/bin/R CMD INSTALL DiffBind
StartedAt: 2024-02-16 20:26:46 -0000 (Fri, 16 Feb 2024)
EndedAt: 2024-02-16 20:28:42 -0000 (Fri, 16 Feb 2024)
EllapsedTime: 116.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/R/R-devel_2024-01-16_r85812/bin/R CMD INSTALL DiffBind
###
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* installing to library ‘/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library’
* installing *source* package ‘DiffBind’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c bamReader.cpp -o bamReader.o
gcc -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c bam_plbuf.c -o bam_plbuf.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c bedReader.cpp -o bedReader.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c bitBucket.cpp -o bitBucket.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c croi_func.cpp -o croi_func.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c croi_main.cpp -o croi_main.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c densitySet.cpp -o densitySet.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c iBucket.cpp -o iBucket.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c interval.cpp -o interval.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c intervalDensity.cpp -o intervalDensity.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c intervalNode.cpp -o intervalNode.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c intervalSet.cpp -o intervalSet.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c intervalTree.cpp -o intervalTree.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c merge.cpp -o merge.o
gcc -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c mergeOne.c -o mergeOne.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c nodeGroup.cpp -o nodeGroup.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c peakOrder.cpp -o peakOrder.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c reader.cpp -o reader.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c sequence.cpp -o sequence.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel_2024-01-16_r85812/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c util.cpp -o util.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-devel_2024-01-16_r85812/lib -L/usr/local/lib -o DiffBind.so RcppExports.o bamReader.o bam_plbuf.o bedReader.o bitBucket.o croi_func.o croi_main.o densitySet.o iBucket.o interval.o intervalDensity.o intervalNode.o intervalSet.o intervalTree.o merge.o mergeOne.o nodeGroup.o peakOrder.o reader.o sequence.o util.o /home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/home/biocbuild/R/R-devel_2024-01-16_r85812/lib -lR
installing to /home/biocbuild/R/R-devel_2024-01-16_r85812/site-library/00LOCK-DiffBind/00new/DiffBind/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DiffBind)