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This page was generated on 2024-02-26 14:00:41 -0500 (Mon, 26 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4671
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4411
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4438
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4414
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 254/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUSpaRse 1.17.0  (landing page)
Lambda Moses
Snapshot Date: 2024-02-23 14:00:08 -0500 (Fri, 23 Feb 2024)
git_url: https://git.bioconductor.org/packages/BUSpaRse
git_branch: devel
git_last_commit: 598a7d7
git_last_commit_date: 2024-01-26 19:07:20 -0500 (Fri, 26 Jan 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for BUSpaRse on merida1


To the developers/maintainers of the BUSpaRse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSpaRse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BUSpaRse
Version: 1.17.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
StartedAt: 2024-02-23 19:12:02 -0500 (Fri, 23 Feb 2024)
EndedAt: 2024-02-23 19:17:20 -0500 (Fri, 23 Feb 2024)
EllapsedTime: 318.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
###
##############################################################################
##############################################################################


* checking for file ‘BUSpaRse/DESCRIPTION’ ... OK
* preparing ‘BUSpaRse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘sparse-matrix.Rmd’ using rmarkdown
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
2024-02-23 19:15:55.197 R[2109:127151062] XType: com.apple.fonts is not accessible.
2024-02-23 19:15:55.197 R[2109:127151062] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘sparse-matrix.Rmd’

--- re-building ‘tr2g.Rmd’ using rmarkdown

Quitting from lines 55-59 [unnamed-chunk-4] (tr2g.Rmd)
Error: processing vignette 'tr2g.Rmd' failed with diagnostics:
cannot open URL 'ftp://ftp.ensemblgenomes.org/pub/https://fungi/release-58/fasta/saccharomyces_cerevisiae/cdna/Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa.gz'
--- failed re-building ‘tr2g.Rmd’

SUMMARY: processing the following file failed:
  ‘tr2g.Rmd’

Error: Vignette re-building failed.
Execution halted