Aaron Taudt
| Snapshot Date: 2023-12-06 14:00:17 -0500 (Wed, 06 Dec 2023) |
| git_url: https://git.bioconductor.org/packages/AneuFinder |
| git_branch: devel |
| git_last_commit: b8d11a4 |
| git_last_commit_date: 2023-10-24 10:48:50 -0500 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2023-12-07 12:27:10 -0500 (Thu, 07 Dec 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" | 4609 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" | 4369 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" | 4375 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" | 4262 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 64/2229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AneuFinder 1.31.0 (landing page) Aaron Taudt
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the AneuFinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: AneuFinder |
| Version: 1.31.0 |
| Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL AneuFinder |
| StartedAt: 2023-12-06 20:24:48 -0000 (Wed, 06 Dec 2023) |
| EndedAt: 2023-12-06 20:25:44 -0000 (Wed, 06 Dec 2023) |
| EllapsedTime: 55.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL AneuFinder
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* installing to library ‘/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library’
* installing *source* package ‘AneuFinder’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c R_interface.cpp -o R_interface.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c densities.cpp -o densities.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c init.cpp -o init.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
320 | #pragma omp parallel for
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loghmm.cpp:480: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
480 | #pragma omp parallel for
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loghmm.cpp:518: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
518 | #pragma omp parallel for
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loghmm.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
583 | #pragma omp parallel for
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g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
384 | #pragma omp parallel for
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scalehmm.cpp:400: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
400 | #pragma omp parallel for
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scalehmm.cpp:694: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
694 | #pragma omp parallel for
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scalehmm.cpp:732: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
732 | #pragma omp parallel for
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scalehmm.cpp:791: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
791 | #pragma omp parallel for
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g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c utility.cpp -o utility.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-devel/lib -L/usr/local/lib -o AneuFinder.so R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -L/home/biocbuild/R/R-devel/lib -lR
installing to /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/00LOCK-AneuFinder/00new/AneuFinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AneuFinder)