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This page was generated on 2022-11-26 11:05:01 -0500 (Sat, 26 Nov 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_64R Under development (unstable) (2022-10-25 r83175) -- "Unsuffered Consequences" 4462
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-10-11 r83083 ucrt) -- "Unsuffered Consequences" 4201
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-13 r83342) -- "Unsuffered Consequences" 4231
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for AneuFinder on nebbiolo1


To the developers/maintainers of the AneuFinder package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 49/2154HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AneuFinder 1.27.0  (landing page)
Aaron Taudt
Snapshot Date: 2022-11-25 14:00:12 -0500 (Fri, 25 Nov 2022)
git_url: https://git.bioconductor.org/packages/AneuFinder
git_branch: master
git_last_commit: 340387c
git_last_commit_date: 2022-11-01 11:13:19 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: AneuFinder
Version: 1.27.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL AneuFinder
StartedAt: 2022-11-25 15:12:23 -0500 (Fri, 25 Nov 2022)
EndedAt: 2022-11-25 15:12:59 -0500 (Fri, 25 Nov 2022)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL AneuFinder
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘AneuFinder’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c R_interface.cpp -o R_interface.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c densities.cpp -o densities.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c init.cpp -o init.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  320 |         #pragma omp parallel for
      | 
loghmm.cpp:480: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  480 |         #pragma omp parallel for
      | 
loghmm.cpp:518: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  518 |                 #pragma omp parallel for
      | 
loghmm.cpp:583: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  583 |         #pragma omp parallel for
      | 
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  384 |         #pragma omp parallel for
      | 
scalehmm.cpp:400: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  400 |         #pragma omp parallel for
      | 
scalehmm.cpp:694: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  694 |         #pragma omp parallel for
      | 
scalehmm.cpp:732: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  732 |                 #pragma omp parallel for
      | 
scalehmm.cpp:791: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  791 |         #pragma omp parallel for
      | 
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2  -Wall -c utility.cpp -o utility.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o AneuFinder.so R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-AneuFinder/00new/AneuFinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AneuFinder)