Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:38:47 -0400 (Thu, 28 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 55/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
AlphaBeta 1.17.0 (landing page) Yadollah Shahryary Dizaji
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the AlphaBeta package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlphaBeta.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: AlphaBeta |
Version: 1.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:AlphaBeta.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings AlphaBeta_1.17.0.tar.gz |
StartedAt: 2024-03-27 19:26:18 -0400 (Wed, 27 Mar 2024) |
EndedAt: 2024-03-27 19:33:59 -0400 (Wed, 27 Mar 2024) |
EllapsedTime: 460.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AlphaBeta.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:AlphaBeta.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings AlphaBeta_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/AlphaBeta.Rcheck’ * using R Under development (unstable) (2024-03-18 r86148) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘AlphaBeta/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘AlphaBeta’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘AlphaBeta’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ABplot: no visible binding for global variable ‘delta.t’ ABplot: no visible binding for global variable ‘div.obs’ BOOTmodel : LSE_intercept: no visible binding for global variable ‘sel’ BOOTmodel: no visible binding for global variable ‘sel’ BOOTmodel: multiple local function definitions for ‘divergence’ with different formal arguments plotPedigree: no visible binding for global variable ‘meth’ plotPedigree: no visible binding for global variable ‘V1’ plotPedigree: no visible binding for global variable ‘V2’ Undefined global functions or variables: V1 V2 delta.t div.obs meth sel * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed BOOTmodel 95.558 1.032 97.450 ABselectUU 93.032 1.033 95.125 ABselectMM 79.483 0.964 81.379 ABneutral 62.664 0.653 63.878 ABselectUUSOMA 6.672 0.071 6.800 ABneutralSOMA 6.477 0.086 6.633 buildPedigree 1.086 0.166 5.979 rc.meth.lvl 0.746 0.029 5.471 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/AlphaBeta.Rcheck/00check.log’ for details.
AlphaBeta.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL AlphaBeta ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘AlphaBeta’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AlphaBeta)
AlphaBeta.Rcheck/AlphaBeta-Ex.timings
name | user | system | elapsed | |
ABneutral | 62.664 | 0.653 | 63.878 | |
ABneutralSOMA | 6.477 | 0.086 | 6.633 | |
ABnull | 0.011 | 0.002 | 0.013 | |
ABplot | 0.341 | 0.017 | 0.363 | |
ABselectMM | 79.483 | 0.964 | 81.379 | |
ABselectMMSOMA | 4.566 | 0.062 | 4.686 | |
ABselectUU | 93.032 | 1.033 | 95.125 | |
ABselectUUSOMA | 6.672 | 0.071 | 6.800 | |
BOOTmodel | 95.558 | 1.032 | 97.450 | |
FtestRSS | 0.015 | 0.002 | 0.017 | |
buildPedigree | 1.086 | 0.166 | 5.979 | |
dMatrix | 0.193 | 0.116 | 0.432 | |
plotPedigree | 0.078 | 0.005 | 0.084 | |
rc.meth.lvl | 0.746 | 0.029 | 5.471 | |