Robert Castelo
| Snapshot Date: 2023-03-28 14:00:22 -0400 (Tue, 28 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/VariantFiltering |
| git_branch: devel |
| git_last_commit: 7638b6f |
| git_last_commit_date: 2022-11-01 11:09:33 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-29 11:06:44 -0400 (Wed, 29 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4547 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4308 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4301 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the VariantFiltering package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VariantFiltering.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2148/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VariantFiltering 1.35.0 (landing page) Robert Castelo
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: VariantFiltering |
| Version: 1.35.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL VariantFiltering |
| StartedAt: 2023-03-28 16:24:31 -0400 (Tue, 28 Mar 2023) |
| EndedAt: 2023-03-28 16:26:33 -0400 (Tue, 28 Mar 2023) |
| EllapsedTime: 122.3 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL VariantFiltering ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’ * installing *source* package ‘VariantFiltering’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using SDK: ‘’ clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Biostrings/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Biostrings/include' -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Biostrings/include' -I/usr/local/include -fPIC -Wall -g -O2 -c methods-WeightMatrix.c -o methods-WeightMatrix.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.3/Resources/library/00LOCK-VariantFiltering/00new/VariantFiltering/libs ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomeInfoDb' for request: 'releaseName' when loading 'VariantFiltering' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'GenomeInfoDb' for request: 'releaseName' when loading 'VariantFiltering' ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location No methods found in package 'GenomeInfoDb' for request: 'releaseName' when loading 'VariantFiltering' ** testing if installed package keeps a record of temporary installation path * DONE (VariantFiltering)