Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-03-29 11:05:34 -0400 (Wed, 29 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4547
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4308
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4301
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for Maaslin2 on palomino3


To the developers/maintainers of the Maaslin2 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Maaslin2.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1080/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Maaslin2 1.13.0  (landing page)
Lauren McIver
Snapshot Date: 2023-03-28 14:00:22 -0400 (Tue, 28 Mar 2023)
git_url: https://git.bioconductor.org/packages/Maaslin2
git_branch: devel
git_last_commit: 56c7729
git_last_commit_date: 2022-11-01 11:20:14 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: Maaslin2
Version: 1.13.0
Command: chmod a+r Maaslin2 -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Maaslin2
StartedAt: 2023-03-28 19:31:01 -0400 (Tue, 28 Mar 2023)
EndedAt: 2023-03-28 19:31:32 -0400 (Tue, 28 Mar 2023)
EllapsedTime: 30.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r Maaslin2 -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Maaslin2
###
##############################################################################
##############################################################################


* checking for file 'Maaslin2/DESCRIPTION' ... OK
* preparing 'Maaslin2':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'maaslin2.Rmd' using rmarkdown
Quitting from lines 173-185 (maaslin2.Rmd) 
Error: processing vignette 'maaslin2.Rmd' failed with diagnostics:
cannot xtfrm data frames
--- failed re-building 'maaslin2.Rmd'

SUMMARY: processing the following file failed:
  'maaslin2.Rmd'

Error: Vignette re-building failed.
Execution halted