Hervé Pagès
| Snapshot Date: 2023-03-23 14:00:15 -0400 (Thu, 23 Mar 2023) |
| git_url: https://git.bioconductor.org/packages/GenomicAlignments |
| git_branch: devel |
| git_last_commit: 1f8a1c3 |
| git_last_commit_date: 2023-03-08 18:26:20 -0400 (Wed, 08 Mar 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-03-24 11:06:48 -0400 (Fri, 24 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4546 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4307 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4299 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GenomicAlignments package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicAlignments.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 789/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GenomicAlignments 1.35.1 (landing page) Hervé Pagès
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: GenomicAlignments |
| Version: 1.35.1 |
| Command: rm -rf GenomicAlignments.buildbin-libdir && mkdir GenomicAlignments.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicAlignments_1.35.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GenomicAlignments.buildbin-libdir |
| StartedAt: 2023-03-24 09:16:26 -0400 (Fri, 24 Mar 2023) |
| EndedAt: 2023-03-24 09:18:28 -0400 (Fri, 24 Mar 2023) |
| EllapsedTime: 121.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GenomicAlignments_1.35.1.tgz |
| PackageFileSize: 2.231 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GenomicAlignments.buildbin-libdir && mkdir GenomicAlignments.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GenomicAlignments_1.35.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R GenomicAlignments.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GenomicAlignments.buildbin-libdir GenomicAlignments_1.35.1.tar.gz' >>>>>>> * installing *source* package ‘GenomicAlignments’ ... ** using staged installation ** libs using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’ using SDK: ‘’ clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I/usr/local/include -fPIC -Wall -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_GenomicAlignments.c -o R_init_GenomicAlignments.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I/usr/local/include -fPIC -Wall -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I/usr/local/include -fPIC -Wall -g -O2 -c cigar_utils.c -o cigar_utils.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I/usr/local/include -fPIC -Wall -g -O2 -c coordinate_mapping_methods.c -o coordinate_mapping_methods.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/IRanges/include' -I/usr/local/include -fPIC -Wall -g -O2 -c encodeOverlaps_methods.c -o encodeOverlaps_methods.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GenomicAlignments.so IRanges_stubs.o R_init_GenomicAlignments.o S4Vectors_stubs.o cigar_utils.o coordinate_mapping_methods.o encodeOverlaps_methods.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.17-bioc/meat/GenomicAlignments.buildbin-libdir/00LOCK-GenomicAlignments/00new/GenomicAlignments/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomicAlignments) >>>>>>> >>>>>>> FIXING LINKS FOR GenomicAlignments.buildbin-libdir/GenomicAlignments/libs/GenomicAlignments.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "GenomicAlignments.buildbin-libdir/GenomicAlignments/libs/GenomicAlignments.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "GenomicAlignments.buildbin-libdir/GenomicAlignments/libs/GenomicAlignments.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "GenomicAlignments.buildbin-libdir/GenomicAlignments/libs/GenomicAlignments.so"