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This page was generated on 2023-03-24 11:06:46 -0400 (Fri, 24 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4546
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4307
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4299
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for FLAMES on merida1


To the developers/maintainers of the FLAMES package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FLAMES.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 691/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FLAMES 1.5.5  (landing page)
Oliver Voogd
Snapshot Date: 2023-03-23 14:00:15 -0400 (Thu, 23 Mar 2023)
git_url: https://git.bioconductor.org/packages/FLAMES
git_branch: devel
git_last_commit: 602a271
git_last_commit_date: 2023-03-06 01:05:53 -0400 (Mon, 06 Mar 2023)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: FLAMES
Version: 1.5.5
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data FLAMES
StartedAt: 2023-03-23 18:07:38 -0400 (Thu, 23 Mar 2023)
EndedAt: 2023-03-23 18:12:00 -0400 (Thu, 23 Mar 2023)
EllapsedTime: 262.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data FLAMES
###
##############################################################################
##############################################################################


* checking for file ‘FLAMES/DESCRIPTION’ ... OK
* preparing ‘FLAMES’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FLAMES_vignette.Rmd’ using rmarkdown
sh: /usr/bin/modulecmd: No such file or directory
sh: /usr/bin/modulecmd: No such file or directory
trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154869/suppl//GSE154869_RAW.tar?tool=geoquery'
Content type 'application/x-tar' length 18575360 bytes (17.7 MB)
==================================================
downloaded 3730 bytes

Quitting from lines 126-154 (FLAMES_vignette.Rmd) 
Error: processing vignette 'FLAMES_vignette.Rmd' failed with diagnostics:
Failed to download /tmp/Rtmp7jLP5G/file794d5a06e3d6/GSE154869/GSE154869_RAW.tar!
--- failed re-building ‘FLAMES_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘FLAMES_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted