Back to Multiple platform build/check report for BioC 3.17:   simplified   long
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This page was generated on 2023-03-31 11:03:05 -0400 (Fri, 31 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4547
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4308
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for EpiCompare on palomino3


To the developers/maintainers of the EpiCompare package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EpiCompare.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 625/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EpiCompare 1.3.4  (landing page)
Sera Choi
Snapshot Date: 2023-03-30 14:00:16 -0400 (Thu, 30 Mar 2023)
git_url: https://git.bioconductor.org/packages/EpiCompare
git_branch: devel
git_last_commit: b643b13
git_last_commit_date: 2023-02-24 15:43:23 -0400 (Fri, 24 Feb 2023)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: EpiCompare
Version: 1.3.4
Command: chmod a+r EpiCompare -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EpiCompare
StartedAt: 2023-03-30 18:38:34 -0400 (Thu, 30 Mar 2023)
EndedAt: 2023-03-30 18:40:49 -0400 (Thu, 30 Mar 2023)
EllapsedTime: 135.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r EpiCompare -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data EpiCompare
###
##############################################################################
##############################################################################


* checking for file 'EpiCompare/DESCRIPTION' ... OK
* preparing 'EpiCompare':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'EpiCompare.Rmd' using rmarkdown
Quitting from lines 193-210 (EpiCompare.Rmd) 
Error: processing vignette 'EpiCompare.Rmd' failed with diagnostics:
Parser error: while parsing a block mapping at line 1, column 1 did not find expected key at line 1, column 45
--- failed re-building 'EpiCompare.Rmd'

--- re-building 'docker.Rmd' using rmarkdown
--- finished re-building 'docker.Rmd'

--- re-building 'example_report.Rmd' using rmarkdown
--- finished re-building 'example_report.Rmd'

SUMMARY: processing the following file failed:
  'EpiCompare.Rmd'

Error: Vignette re-building failed.
Execution halted