This page was generated on 2023-10-16 11:35:16 -0400 (Mon, 16 Oct 2023).
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
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* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 76(A), 28(P), ChiSq: 349, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 79(A), 33(P), ChiSq: 147, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 86(A), 42(P), ChiSq: 93, Time: 00:00:01 / 00:00:03
40000 of 50000, Atoms: 81(A), 41(P), ChiSq: 140, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 77(A), 39(P), ChiSq: 109, Time: 00:00:02 / 00:00:04
-- Sampling Phase --
10000 of 50000, Atoms: 85(A), 40(P), ChiSq: 155, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 85(A), 37(P), ChiSq: 129, Time: 00:00:03 / 00:00:04
30000 of 50000, Atoms: 83(A), 34(P), ChiSq: 114, Time: 00:00:03 / 00:00:03
40000 of 50000, Atoms: 78(A), 33(P), ChiSq: 107, Time: 00:00:04 / 00:00:04
50000 of 50000, Atoms: 87(A), 38(P), ChiSq: 128, Time: 00:00:04 / 00:00:04
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
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downloaded 51.9 MB
Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed
--- failed re-building ‘CoGAPS.Rmd’
SUMMARY: processing the following file failed:
‘CoGAPS.Rmd’
Error: Vignette re-building failed.
Execution halted