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This page was generated on 2023-10-16 11:35:16 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 395/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoGAPS 3.20.0  (landing page)
Elana J. Fertig
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: RELEASE_3_17
git_last_commit: 6861e5b
git_last_commit_date: 2023-07-11 13:53:11 -0400 (Tue, 11 Jul 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.6.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for CoGAPS on nebbiolo1


To the developers/maintainers of the CoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CoGAPS
Version: 3.20.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
StartedAt: 2023-10-15 16:22:58 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 16:28:49 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 351.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
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* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoGAPS.Rmd’ using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 76(A), 28(P), ChiSq: 349, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 79(A), 33(P), ChiSq: 147, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 86(A), 42(P), ChiSq: 93, Time: 00:00:01 / 00:00:03
40000 of 50000, Atoms: 81(A), 41(P), ChiSq: 140, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 77(A), 39(P), ChiSq: 109, Time: 00:00:02 / 00:00:04
-- Sampling Phase --
10000 of 50000, Atoms: 85(A), 40(P), ChiSq: 155, Time: 00:00:02 / 00:00:03
20000 of 50000, Atoms: 85(A), 37(P), ChiSq: 129, Time: 00:00:03 / 00:00:04
30000 of 50000, Atoms: 83(A), 34(P), ChiSq: 114, Time: 00:00:03 / 00:00:03
40000 of 50000, Atoms: 78(A), 33(P), ChiSq: 107, Time: 00:00:04 / 00:00:04
50000 of 50000, Atoms: 87(A), 38(P), ChiSq: 128, Time: 00:00:04 / 00:00:04
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
======
downloaded 51.9 MB


Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed
--- failed re-building ‘CoGAPS.Rmd’

SUMMARY: processing the following file failed:
  ‘CoGAPS.Rmd’

Error: Vignette re-building failed.
Execution halted