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This page was generated on 2023-04-21 11:03:12 -0400 (Fri, 21 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_644.3.0 RC (2023-04-13 r84269) -- "Already Tomorrow" 4590
palomino3Windows Server 2022 Datacenterx644.3.0 RC (2023-04-13 r84269 ucrt) -- "Already Tomorrow" 4320
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for CoGAPS on palomino3


To the developers/maintainers of the CoGAPS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoGAPS.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Package 395/2227HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoGAPS 3.19.1  (landing page)
Elana J. Fertig
Snapshot Date: 2023-04-20 14:00:15 -0400 (Thu, 20 Apr 2023)
git_url: https://git.bioconductor.org/packages/CoGAPS
git_branch: devel
git_last_commit: b49bab1
git_last_commit_date: 2023-04-10 16:26:58 -0400 (Mon, 10 Apr 2023)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

Summary

Package: CoGAPS
Version: 3.19.1
Command: chmod a+r CoGAPS -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoGAPS
StartedAt: 2023-04-20 17:56:32 -0400 (Thu, 20 Apr 2023)
EndedAt: 2023-04-20 18:14:53 -0400 (Thu, 20 Apr 2023)
EllapsedTime: 1101.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r CoGAPS -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################


* checking for file 'CoGAPS/DESCRIPTION' ... OK
* preparing 'CoGAPS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CoGAPS.Rmd' using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 71(A), 31(P), ChiSq: 342, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 70(A), 42(P), ChiSq: 143, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 82(A), 43(P), ChiSq: 111, Time: 00:00:00 / 00:00:00
40000 of 50000, Atoms: 75(A), 40(P), ChiSq: 144, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 75(A), 43(P), ChiSq: 112, Time: 00:00:01 / 00:00:02
-- Sampling Phase --
10000 of 50000, Atoms: 72(A), 41(P), ChiSq: 140, Time: 00:00:01 / 00:00:01
20000 of 50000, Atoms: 77(A), 44(P), ChiSq: 108, Time: 00:00:02 / 00:00:02
30000 of 50000, Atoms: 74(A), 38(P), ChiSq: 143, Time: 00:00:02 / 00:00:02
40000 of 50000, Atoms: 79(A), 37(P), ChiSq: 123, Time: 00:00:02 / 00:00:02
50000 of 50000, Atoms: 81(A), 38(P), ChiSq: 135, Time: 00:00:03 / 00:00:03
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
=========================================
downloaded 339.0 MB

Quitting from lines 235-240 (CoGAPS.Rmd) 
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed
--- failed re-building 'CoGAPS.Rmd'

SUMMARY: processing the following file failed:
  'CoGAPS.Rmd'

Error: Vignette re-building failed.
In addition: Warning message:
In tools::buildVignettes(dir = ".", tangle = TRUE) :
  Files named as vignettes but with no recognized vignette engine:
   'vignettes/modsimdebug.Rmd'
(Is a VignetteBuilder field missing?)
Execution halted