Aaron Taudt
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/AneuFinder |
| git_branch: RELEASE_3_17 |
| git_last_commit: e17d810 |
| git_last_commit_date: 2023-04-25 10:45:33 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:54 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 62/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AneuFinder 1.28.0 (landing page) Aaron Taudt
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the AneuFinder package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AneuFinder.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AneuFinder |
| Version: 1.28.0 |
| Command: rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=AneuFinder.buildbin-libdir AneuFinder_1.28.0.tar.gz |
| StartedAt: 2023-10-16 08:24:31 -0400 (Mon, 16 Oct 2023) |
| EndedAt: 2023-10-16 08:25:24 -0400 (Mon, 16 Oct 2023) |
| EllapsedTime: 52.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: AneuFinder_1.28.0.zip |
| PackageFileSize: 2.526 MiB |
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### Running command:
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### rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=AneuFinder.buildbin-libdir AneuFinder_1.28.0.tar.gz
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* installing *source* package 'AneuFinder' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_interface.cpp -o R_interface.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c densities.cpp -o densities.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o
g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c loghmm.cpp -o loghmm.o
loghmm.cpp:320: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
320 | #pragma omp parallel for
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loghmm.cpp:480: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
480 | #pragma omp parallel for
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loghmm.cpp:518: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
518 | #pragma omp parallel for
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loghmm.cpp:583: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
583 | #pragma omp parallel for
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g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c scalehmm.cpp -o scalehmm.o
scalehmm.cpp:384: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
384 | #pragma omp parallel for
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scalehmm.cpp:400: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
400 | #pragma omp parallel for
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scalehmm.cpp:694: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
694 | #pragma omp parallel for
|
scalehmm.cpp:732: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
732 | #pragma omp parallel for
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scalehmm.cpp:791: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
791 | #pragma omp parallel for
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g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utility.cpp -o utility.o
g++ -std=gnu++17 -shared -s -static-libgcc -o AneuFinder.dll tmp.def R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/AneuFinder.buildbin-libdir/00LOCK-AneuFinder/00new/AneuFinder/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'AneuFinder' as AneuFinder_1.28.0.zip
* DONE (AneuFinder)