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This page was generated on 2022-08-03 13:22:02 -0400 (Wed, 03 Aug 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4361
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4114
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4179
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for NxtIRFcore on palomino3


To the developers/maintainers of the NxtIRFcore package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NxtIRFcore.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1346/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NxtIRFcore 1.2.1  (landing page)
Alex Chit Hei Wong
Snapshot Date: 2022-08-02 13:55:13 -0400 (Tue, 02 Aug 2022)
git_url: https://git.bioconductor.org/packages/NxtIRFcore
git_branch: RELEASE_3_15
git_last_commit: b13e810
git_last_commit_date: 2022-06-22 07:29:58 -0400 (Wed, 22 Jun 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: NxtIRFcore
Version: 1.2.1
Command: rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.2.1.tar.gz
StartedAt: 2022-08-03 07:20:34 -0400 (Wed, 03 Aug 2022)
EndedAt: 2022-08-03 07:22:30 -0400 (Wed, 03 Aug 2022)
EllapsedTime: 115.7 seconds
RetCode: 0
Status:   OK  
PackageFile: NxtIRFcore_1.2.1.zip
PackageFileSize: 3.344 MiB

Command output

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###
### Running command:
###
###   rm -rf NxtIRFcore.buildbin-libdir && mkdir NxtIRFcore.buildbin-libdir && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=NxtIRFcore.buildbin-libdir NxtIRFcore_1.2.1.tar.gz
###
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* installing *source* package 'NxtIRFcore' ...
** using staged installation
** libs
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BAM2blocks.cpp -o BAM2blocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FastaReader.cpp -o FastaReader.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FragmentBlocks.cpp -o FragmentBlocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c GZTools.cpp -o GZTools.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c IRFinder.cpp -o IRFinder.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor.cpp -o ReadBlockProcessor.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ReadBlockProcessor_CoverageBlocks.cpp -o ReadBlockProcessor_CoverageBlocks.o
g++  -std=gnu++11 -I"F:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include' -I'F:/biocbuild/bbs-3.15-bioc/R/library/RcppProgress/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"  -fopenmp -DRNXTIRF   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c covTools.cpp -o covTools.o
g++ -shared -s -static-libgcc -o NxtIRFcore.dll tmp.def BAM2blocks.o FastaReader.o FragmentBlocks.o GZTools.o IRFinder.o RcppExports.o ReadBlockProcessor.o ReadBlockProcessor_CoverageBlocks.o covTools.o -fopenmp -DRNXTIRF -LF:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.15-bioc/meat/NxtIRFcore.buildbin-libdir/00LOCK-NxtIRFcore/00new/NxtIRFcore/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'NxtIRFcore' as NxtIRFcore_1.2.1.zip
* DONE (NxtIRFcore)