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This page was generated on 2022-05-27 12:08:10 -0400 (Fri, 27 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for HilbertVis on merida1


To the developers/maintainers of the HilbertVis package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertVis.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 897/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertVis 1.54.0  (landing page)
Simon Anders
Snapshot Date: 2022-05-26 13:55:15 -0400 (Thu, 26 May 2022)
git_url: https://git.bioconductor.org/packages/HilbertVis
git_branch: RELEASE_3_15
git_last_commit: a901481
git_last_commit_date: 2022-04-26 11:02:16 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: HilbertVis
Version: 1.54.0
Command: rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.54.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R HilbertVis.buildbin-libdir
StartedAt: 2022-05-27 10:36:48 -0400 (Fri, 27 May 2022)
EndedAt: 2022-05-27 10:36:55 -0400 (Fri, 27 May 2022)
EllapsedTime: 6.4 seconds
RetCode: 0
Status:   OK  
PackageFile: HilbertVis_1.54.0.tgz
PackageFileSize: 1.103 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HilbertVis.buildbin-libdir && mkdir HilbertVis.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh HilbertVis_1.54.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R HilbertVis.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=HilbertVis.buildbin-libdir HilbertVis_1.54.0.tar.gz'
>>>>>>> 

* installing *source* package ‘HilbertVis’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c hilbert.c -o hilbert.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c make_wiggle_vector.c -o make_wiggle_vector.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c shrink_vector.c -o shrink_vector.o
shrink_vector.c:76:20: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^
shrink_vector.c:76:20: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                   ^~~
                   fabs
shrink_vector.c:76:49: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^
shrink_vector.c:76:49: note: use function 'fabs' instead
               if( abs( REAL( vector )[ j ] ) > abs( val ) )
                                                ^~~
                                                fabs
2 warnings generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o HilbertVis.so hilbert.o make_wiggle_vector.o shrink_vector.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/HilbertVis.buildbin-libdir/00LOCK-HilbertVis/00new/HilbertVis/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertVis)


>>>>>>> 
>>>>>>> FIXING LINKS FOR HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "HilbertVis.buildbin-libdir/HilbertVis/libs/HilbertVis.so"