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BUILD report for rTRM on merida1

This page was generated on 2021-05-06 12:36:36 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the rTRM package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1600/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rTRM 1.28.0  (landing page)
Diego Diez
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/rTRM
Branch: RELEASE_3_12
Last Commit: 2908ebc
Last Changed Date: 2020-10-27 10:51:24 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: rTRM
Version: 1.28.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
StartedAt: 2021-05-05 21:53:33 -0400 (Wed, 05 May 2021)
EndedAt: 2021-05-05 21:54:28 -0400 (Wed, 05 May 2021)
EllapsedTime: 55.0 seconds
RetCode: 0
Status:   OK  
PackageFile: rTRM_1.28.0.tar.gz
PackageFileSize: 3.167 MiB

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
###
##############################################################################
##############################################################################


* checking for file ‘rTRM/DESCRIPTION’ ... OK
* preparing ‘rTRM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX Loading required package: igraph

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

...
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdflatex)
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LaTeX2e <2020-02-02> patch level 5
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Document Class: book 2019/12/20 v1.4l Standard LaTeX document class
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(/Library/Frameworks/R.framework/Resources/share/texmf/tex/latex/Rd.sty
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ty)) (/usr/local/texlive/2020/texmf-dist/tex/latex/inconsolata/t1zi4.fd)
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 []\T1/zi4/m/n/10 findTRM(g, target, query, method = "nsa", max.bridge = 1, ext
ended = FALSE, strict = FALSE, type = "igraph") 
[4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14]
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 []\T1/zi4/m/n/10 plotGraph(g, layout = layout.fruchterman.reingold, mar = .5, 
vertex.pch = 21, vertex.cex, vertex.col, vertex.bg, vertex.lwd, edge.col, edge.
lwd, edge.lty, label = TRUE, label.col, label.cex, label.pos = NULL, label.offs
et = 1.5, adjust.label.col = FALSE, normalize.layout = TRUE) 
[15]
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 []\T1/zi4/m/n/10 plotTRM(g, layout = layout.fruchterman.reingold, mar = .5, ve
rtex.col, vertex.cex, vertex.lwd, edge.col, edge.lwd, edge.lty, label = TRUE, l
abel.cex, label.col, label.pos = NULL, label.offset = 1.5, adjust.label.col = F
ALSE, normalize.layout = TRUE) 
[16] [17]
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 []\T1/zi4/m/n/10 processBiogrid(dblist, org = "human", simplify = TRUE, type =
 "physical", mimic.old = FALSE) 
[18]
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[19] (/private/tmp/Rtmp7te69c/Rbuild12057734142a3/rTRM/.Rd2pdf73815/Rd2.aux)

Package rerunfilecheck Warning: File `Rd2.out' has changed.
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 )
(see the transcript file for additional information){/usr/local/texlive/2020/te
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enc/dvips/inconsolata/i4-t1-0.enc}</usr/local/texlive/2020/texmf-dist/fonts/typ
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a.pfb></usr/local/texlive/2020/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>
Output written on Rd2.pdf (19 pages, 106663 bytes).
Transcript written on Rd2.log.
This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdflatex)
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LaTeX2e <2020-02-02> patch level 5
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vertex.pch = 21, vertex.cex, vertex.col, vertex.bg, vertex.lwd, edge.col, edge.
lwd, edge.lty, label = TRUE, label.col, label.cex, label.pos = NULL, label.offs
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This is makeindex, version 2.15 [TeX Live 2020] (kpathsea + Thai support).
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