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CHECK report for cbaf on tokay1

This page was generated on 2020-08-07 12:12:52 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE cbaf PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 231/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cbaf 1.11.1
Arman Shahrisa
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/cbaf
Branch: master
Last Commit: f400891
Last Changed Date: 2020-05-05 12:31:17 -0400 (Tue, 05 May 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  ERROR  OK [ ERROR ] ERROR 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: cbaf
Version: 1.11.1
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cbaf.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings cbaf_1.11.1.tar.gz
StartedAt: 2020-08-07 04:09:23 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 04:09:26 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 3.5 seconds
RetCode: 1
Status:  ERROR  
CheckDir: cbaf.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cbaf.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings cbaf_1.11.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/cbaf.Rcheck'
* using R version 4.0.2 (2020-06-22)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cbaf/DESCRIPTION' ... OK
* this is package 'cbaf' version '1.11.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cbaf' can be installed ... ERROR
Installation failed.
See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/cbaf.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/cbaf.Rcheck/00check.log'
for details.


Installation output

cbaf.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/cbaf_1.11.1.tar.gz && rm -rf cbaf.buildbin-libdir && mkdir cbaf.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cbaf.buildbin-libdir cbaf_1.11.1.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL cbaf_1.11.1.zip && rm cbaf_1.11.1.tar.gz cbaf_1.11.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  554k  100  554k    0     0  10.0M      0 --:--:-- --:--:-- --:--:-- 10.8M

install for i386

* installing *source* package 'cbaf' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: .onLoad failed in loadNamespace() for 'rJava', details:
  call: library.dynam("rJava", pkgname, libname)
  error: DLL 'rJava' not found: maybe not installed for this architecture?
Execution halted
ERROR: lazy loading failed for package 'cbaf'
* removing 'C:/Users/biocbuild/bbs-3.12-bioc/meat/cbaf.buildbin-libdir/cbaf'

Tests output


Example timings