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INSTALL report for canceR on tokay1

This page was generated on 2020-08-07 12:05:51 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE canceR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 217/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
canceR 1.23.0
Karim Mezhoud
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/canceR
Branch: master
Last Commit: eaa1ca4
Last Changed Date: 2020-04-27 14:47:07 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: canceR
Version: 1.23.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/canceR_1.23.0.tar.gz && rm -rf canceR.buildbin-libdir && mkdir canceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=canceR.buildbin-libdir canceR_1.23.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL canceR_1.23.0.zip && rm canceR_1.23.0.tar.gz canceR_1.23.0.zip
StartedAt: 2020-08-06 18:48:02 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 18:49:32 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 89.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/canceR_1.23.0.tar.gz && rm -rf canceR.buildbin-libdir && mkdir canceR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=canceR.buildbin-libdir canceR_1.23.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL canceR_1.23.0.zip && rm canceR_1.23.0.tar.gz canceR_1.23.0.zip
###
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 82 28.3M   82 23.3M    0     0  70.9M      0 --:--:-- --:--:-- --:--:-- 71.6M
100 28.3M  100 28.3M    0     0  75.9M      0 --:--:-- --:--:-- --:--:-- 76.5M

install for i386

* installing *source* package 'canceR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'canceR'
    finding HTML links ... done
    GSEA.Analyze.Sets                       html  
    GSEA.ConsPlot                           html  
    GSEA.EnrichmentScore                    html  
    GSEA.EnrichmentScore2                   html  
    GSEA.Gct2Frame                          html  
    GSEA.Gct2Frame2                         html  
    GSEA.GeneRanking                        html  
    GSEA.HeatMapPlot                        html  
    GSEA.HeatMapPlot2                       html  
    GSEA.NormalizeCols                      html  
    GSEA.NormalizeRows                      html  
    GSEA                                    html  
    GSEA.ReadClsFile                        html  
    GSEA.Res2Frame                          html  
    GSEA.Threshold                          html  
    GSEA.VarFilter                          html  
    GSEA.write.gct                          html  
    Match_GeneList_MSigDB                   html  
    OLD.GSEA.EnrichmentScore                html  
    Run.GSEA                                html  
    about                                   html  
    canceR                                  html  
    canceRHelp                              html  
    canceR_Vignette                         html  
    cbind.na                                html  
    dialogGeneClassifier                    html  
    dialogMetOption                         html  
    dialogMut                               html  
    dialogOptionCircos                      html  
    dialogOptionGSEAlm                      html  
    dialogOptionPhenoTest                   html  
    dialogPlotOption_SkinCor                html  
    dialogSamplingGSEA                      html  
    dialogSelectFiles_GSEA                  html  
    dialogSpecificMut                       html  
    dialogSummary_GSEA                      html  
    dialoggetGeneListMSigDB                 html  
    displayInTable                          html  
    getCases                                html  
    getCasesGenProfs                        html  
    getCircos                               html  
    getClinicData_MultipleCases             html  
    getClinicalDataMatrix                   html  
    getCor_ExpCNAMet                        html  
    getGCTCLSExample                        html  
    getGCT_CLSfiles                         html  
    getGSEAlm_Diseases                      html  
    getGSEAlm_Variables                     html  
    getGenProfs                             html  
    getGeneExpMatrix                        html  
    getGeneList                             html  
    getGeneListExample                      html  
    getGeneListFromMSigDB                   html  
    getGenesClassifier                      html  
    getGenesTree_MultipleCases              html  
    getGenesTree_SingleCase                 html  
    getInTable                              html  
    getListProfData                         html  
    getMSigDB                               html  
    getMSigDBExample                        html  
    getMSigDBfile                           html  
    getMegaProfData                         html  
    getMetDataMultipleGenes                 html  
    getMutData                              html  
    getPhenoTest                            html  
    getProfilesDataMultipleGenes            html  
    getProfilesDataSingleGene               html  
    getSpecificMut                          html  
    getSummaryGSEA                          html  
    getSurvival                             html  
    getTextWin                              html  
    geteSet                                 html  
    modalDialog                             html  
    myGlobalEnv                             html  
    plotModel                               html  
    plot_1Gene_2GenProfs                    html  
    plot_2Genes_1GenProf                    html  
    rbind.na                                html  
    setWorkspace                            html  
    testCheckedCaseGenProf                  html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'canceR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'canceR' as canceR_1.23.0.zip
* DONE (canceR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'canceR' successfully unpacked and MD5 sums checked