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INSTALL report for bsseq on malbec1

This page was generated on 2020-08-14 10:33:15 -0400 (Fri, 14 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE bsseq PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 203/1889HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bsseq 1.25.5
Kasper Daniel Hansen
Snapshot Date: 2020-08-13 14:54:37 -0400 (Thu, 13 Aug 2020)
URL: https://git.bioconductor.org/packages/bsseq
Branch: master
Last Commit: f2728b7
Last Changed Date: 2020-06-28 21:21:07 -0400 (Sun, 28 Jun 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  WARNINGS 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: bsseq
Version: 1.25.5
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bsseq
StartedAt: 2020-08-13 17:21:46 -0400 (Thu, 13 Aug 2020)
EndedAt: 2020-08-13 17:23:04 -0400 (Thu, 13 Aug 2020)
EllapsedTime: 78.5 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL bsseq
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* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘bsseq’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/beachmat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c check_M_and_Cov.cpp -o check_M_and_Cov.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/beachmat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c init.cpp -o init.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.12-bioc/R/library/beachmat/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c utils.cpp -o utils.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o bsseq.so check_M_and_Cov.o init.o utils.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-bsseq/00new/bsseq/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bsseq)