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INSTALL report for biobroom on tokay1

This page was generated on 2020-08-07 12:08:02 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE biobroom PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 145/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biobroom 1.21.0
John D. Storey and Andrew J. Bass
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/biobroom
Branch: master
Last Commit: b8fc28f
Last Changed Date: 2020-04-27 14:52:30 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biobroom
Version: 1.21.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/biobroom_1.21.0.tar.gz && rm -rf biobroom.buildbin-libdir && mkdir biobroom.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biobroom.buildbin-libdir biobroom_1.21.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biobroom_1.21.0.zip && rm biobroom_1.21.0.tar.gz biobroom_1.21.0.zip
StartedAt: 2020-08-06 16:55:25 -0400 (Thu, 06 Aug 2020)
EndedAt: 2020-08-06 16:56:00 -0400 (Thu, 06 Aug 2020)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/biobroom_1.21.0.tar.gz && rm -rf biobroom.buildbin-libdir && mkdir biobroom.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biobroom.buildbin-libdir biobroom_1.21.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL biobroom_1.21.0.zip && rm biobroom_1.21.0.tar.gz biobroom_1.21.0.zip
###
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100  217k  100  217k    0     0  6527k      0 --:--:-- --:--:-- --:--:-- 7266k

install for i386

* installing *source* package 'biobroom' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'biobroom'
    finding HTML links ... done
    DESeq2_tidiers                          html  
    ExpressionSet_tidiers                   html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp2Pb7vy/R.INSTALL13e067b9693c/biobroom/man/ExpressionSet_tidiers.Rd:17: file link 'assayDataElement' in package 'Biobase' does not exist and so has been treated as a topic
    GRanges_tidiers                         html  
    MSnSet_tidiers                          html  
    SummarizedExperiment_tidiers            html  
    biobroom                                html  
    edgeR_tidiers                           html  
    edge_tidiers                            html  
    hammer                                  html  
    limma_tidiers                           html  
    list_tidiers                            html  
    qvalue_tidiers                          html  
    sva_tidiers                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biobroom' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biobroom' as biobroom_1.21.0.zip
* DONE (biobroom)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'biobroom' successfully unpacked and MD5 sums checked