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INSTALL report for abseqR on tokay1

This page was generated on 2020-08-12 11:48:41 -0400 (Wed, 12 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE abseqR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 9/1885HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
abseqR 1.7.0
JiaHong Fong
Snapshot Date: 2020-08-11 14:50:16 -0400 (Tue, 11 Aug 2020)
URL: https://git.bioconductor.org/packages/abseqR
Branch: master
Last Commit: 8a4126d
Last Changed Date: 2020-04-27 15:21:22 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: abseqR
Version: 1.7.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/abseqR_1.7.0.tar.gz && rm -rf abseqR.buildbin-libdir && mkdir abseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=abseqR.buildbin-libdir abseqR_1.7.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL abseqR_1.7.0.zip && rm abseqR_1.7.0.tar.gz abseqR_1.7.0.zip
StartedAt: 2020-08-11 18:06:42 -0400 (Tue, 11 Aug 2020)
EndedAt: 2020-08-11 18:08:33 -0400 (Tue, 11 Aug 2020)
EllapsedTime: 110.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/abseqR_1.7.0.tar.gz && rm -rf abseqR.buildbin-libdir && mkdir abseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=abseqR.buildbin-libdir abseqR_1.7.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL abseqR_1.7.0.zip && rm abseqR_1.7.0.tar.gz abseqR_1.7.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1519k  100 1519k    0     0  24.6M      0 --:--:-- --:--:-- --:--:-- 26.4M

install for i386

* installing *source* package 'abseqR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'abseqR'
    finding HTML links ... done
    AbSeqCRep-class                         html  
    AbSeqRep-class                          html  
    abseqReport                             html  
    dot-UTR5Analysis                        html  
    dot-abundanceAnalysis                   html  
    dot-abundancePlot                       html  
    dot-alignQualityHeatMaps                html  
    dot-allPrimerNames                      html  
    dot-aminoAcidBar                        html  
    dot-aminoAcidPlot                       html  
    dot-analyzeUpstreamValidity             html  
    dot-annotAnalysis                       html  
    dot-asRepertoireAlignLen                html  
    dot-asRepertoireBitscore                html  
    dot-asRepertoireChain                   html  
    dot-asRepertoireDir                     html  
    dot-asRepertoireList                    html  
    dot-asRepertoireName                    html  
    dot-asRepertoirePrimer3                 html  
    dot-asRepertoirePrimer5                 html  
    dot-asRepertoireQueryStart              html  
    dot-asRepertoireSubjectStart            html  
    dot-asRepertoireUpstream                html  
    dot-boxPlot                             html  
    dot-calculateDInd                       html  
    dot-calculateDiversityEstimates         html  
    dot-canonicalizeTitle                   html  
    dot-capitalize                          html  
    dot-checkVert                           html  
    dot-cloneDistHist                       html  
    dot-cloneDistMarginal                   html  
    dot-clonotypeAnalysis                   html  
    dot-collateReports                      html  
    dot-commonPrimerNames                   html  
    dot-correlationTest                     html  
    dot-distanceMeasure                     html  
    dot-diversityAnalysis                   html  
    dot-emptyPlot                           html  
    dot-findRepertoires                     html  
    dot-generateAllSpectratypes             html  
    dot-generateDelayedReport               html  
    dot-generateReport                      html  
    dot-getLineTypes                        html  
    dot-getTotal                            html  
    dot-hmFromMatrix                        html  
    dot-inferAnalyzed                       html  
    dot-loadMatrixFromDF                    html  
    dot-loadSamplesFromString               html  
    dot-pairwiseComparison                  html  
    dot-plotCirclize                        html  
    dot-plotDist                            html  
    dot-plotDiversityCurves                 html  
    dot-plotDuplication                     html  
    dot-plotErrorDist                       html  
    dot-plotIGVErrors                       html  
    dot-plotIGVUpstreamLenDist              html  
    dot-plotIGVUpstreamLenDistDetailed      html  
    dot-plotPrimerIGVStatus                 html  
    dot-plotPrimerIntegrity                 html  
    dot-plotRarefaction                     html  
    dot-plotRecapture                       html  
    dot-plotSamples                         html  
    dot-plotSpectratype                     html  
    dot-plotUpstreamLength                  html  
    dot-plotUpstreamLengthDist              html  
    dot-primerAnalysis                      html  
    dot-prodDistPlot                        html  
    dot-productivityAnalysis                html  
    dot-productivityPlot                    html  
    dot-readSummary                         html  
    dot-regionAnalysis                      html  
    dot-reportLBE                           html  
    dot-saveAs                              html  
    dot-scatterPlot                         html  
    dot-scatterPlotComplex                  html  
    dot-secretionSignalAnalysis             html  
    dot-substituteStringInFile              html  
    dot-summarySE                           html  
    dot-topNDist                            html  
    dot-vennIntersection                    html  
    plus-AbSeqCRep-AbSeqCRep-method         html  
    plus-AbSeqCRep-AbSeqRep-method          html  
    plus-AbSeqRep-AbSeqCRep-method          html  
    plus-AbSeqRep-AbSeqRep-method           html  
    report                                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'abseqR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'abseqR' as abseqR_1.7.0.zip
* DONE (abseqR)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'abseqR' successfully unpacked and MD5 sums checked