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CHECK report for BridgeDbR on tokay1

This page was generated on 2020-08-07 12:05:18 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BridgeDbR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 200/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BridgeDbR 1.23.0
Egon Willighagen
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/BridgeDbR
Branch: master
Last Commit: ee9ccef
Last Changed Date: 2020-04-27 14:45:02 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  ERROR  OK [ ERROR ] ERROR 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BridgeDbR
Version: 1.23.0
Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BridgeDbR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BridgeDbR_1.23.0.tar.gz
StartedAt: 2020-08-07 01:54:47 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 01:54:52 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 4.9 seconds
RetCode: 1
Status:  ERROR  
CheckDir: BridgeDbR.Rcheck
Warnings: NA

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BridgeDbR.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings BridgeDbR_1.23.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/BridgeDbR.Rcheck'
* using R version 4.0.2 (2020-06-22)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BridgeDbR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BridgeDbR' version '1.23.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BridgeDbR' can be installed ... ERROR
Installation failed.
See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/BridgeDbR.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/BridgeDbR.Rcheck/00check.log'
for details.


Installation output

BridgeDbR.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/BridgeDbR_1.23.0.tar.gz && rm -rf BridgeDbR.buildbin-libdir && mkdir BridgeDbR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BridgeDbR.buildbin-libdir BridgeDbR_1.23.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL BridgeDbR_1.23.0.zip && rm BridgeDbR_1.23.0.tar.gz BridgeDbR_1.23.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2369k  100 2369k    0     0  37.0M      0 --:--:-- --:--:-- --:--:-- 39.2M

install for i386

* installing *source* package 'BridgeDbR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package 'rJava' is not installed for 'arch = i386'
Execution halted
ERROR: lazy loading failed for package 'BridgeDbR'
* removing 'C:/Users/biocbuild/bbs-3.12-bioc/meat/BridgeDbR.buildbin-libdir/BridgeDbR'

Tests output


Example timings