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BUILD BIN report for BANDITS on merida1

This page was generated on 2020-09-21 11:27:28 -0400 (Mon, 21 Sep 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BANDITS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 108/1912HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BANDITS 1.5.1
Simone Tiberi
Snapshot Date: 2020-09-20 14:41:51 -0400 (Sun, 20 Sep 2020)
URL: https://git.bioconductor.org/packages/BANDITS
Branch: master
Last Commit: 757e4e5
Last Changed Date: 2020-07-16 06:33:37 -0400 (Thu, 16 Jul 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
riesling1 Windows Server 2019 Standard / x64  OK  OK  OK  OK 
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BANDITS
Version: 1.5.1
Command: rm -rf BANDITS.buildbin-libdir && mkdir BANDITS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BANDITS_1.5.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BANDITS.buildbin-libdir
StartedAt: 2020-09-21 09:59:25 -0400 (Mon, 21 Sep 2020)
EndedAt: 2020-09-21 10:00:33 -0400 (Mon, 21 Sep 2020)
EllapsedTime: 68.0 seconds
RetCode: 0
Status:  OK 
PackageFile: BANDITS_1.5.1.tgz
PackageFileSize: 1.378 MiB

Command output

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###
### Running command:
###
###   rm -rf BANDITS.buildbin-libdir && mkdir BANDITS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BANDITS_1.5.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BANDITS.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BANDITS.buildbin-libdir BANDITS_1.5.1.tar.gz'
>>>>>>> 

* installing *source* package ‘BANDITS’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rcpp_Together.cpp -o Rcpp_Together.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rcpp_Together_MultiGroup.cpp -o Rcpp_Together_MultiGroup.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rcpp_Unique.cpp -o Rcpp_Unique.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Rcpp_Unique_MultiGroup.cpp -o Rcpp_Unique_MultiGroup.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BANDITS.so RcppExports.o Rcpp_Together.o Rcpp_Together_MultiGroup.o Rcpp_Unique.o Rcpp_Unique_MultiGroup.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/BANDITS.buildbin-libdir/00LOCK-BANDITS/00new/BANDITS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BANDITS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BANDITS.buildbin-libdir/BANDITS/libs/BANDITS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "BANDITS.buildbin-libdir/BANDITS/libs/BANDITS.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BANDITS.buildbin-libdir/BANDITS/libs/BANDITS.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BANDITS.buildbin-libdir/BANDITS/libs/BANDITS.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "BANDITS.buildbin-libdir/BANDITS/libs/BANDITS.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "BANDITS.buildbin-libdir/BANDITS/libs/BANDITS.so"