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BUILD BIN report for ACME on tokay1

This page was generated on 2020-08-07 11:57:46 -0400 (Fri, 07 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ACME PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 14/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.45.0
Sean Davis
Snapshot Date: 2020-08-06 14:50:46 -0400 (Thu, 06 Aug 2020)
URL: https://git.bioconductor.org/packages/ACME
Branch: master
Last Commit: 58f42e2
Last Changed Date: 2020-04-27 14:15:01 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ACME
Version: 2.45.0
Command: rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.45.0.tar.gz
StartedAt: 2020-08-07 06:59:57 -0400 (Fri, 07 Aug 2020)
EndedAt: 2020-08-07 07:00:57 -0400 (Fri, 07 Aug 2020)
EllapsedTime: 59.8 seconds
RetCode: 0
Status:  OK  
PackageFile: ACME_2.45.0.zip
PackageFileSize: 10.03 MiB

Command output

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### Running command:
###
###   rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ACME.buildbin-libdir ACME_2.45.0.tar.gz
###
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install for i386

* installing *source* package 'ACME' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    firstprobe>0) {
    ~~~~~~~~~~^~
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    lastprobe<(na-1)) {
    ~~~~~~~~~^~~~~~~
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^~
windowChisq.c: At top level:
windowChisq.c:86:20: warning: initialization of 'void * (*)()' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types]
     {"windowChisq",&windowChisq,5},
                    ^
windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun')
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/ACME.buildbin-libdir/00LOCK-ACME/00new/ACME/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ACME'
    finding HTML links ... done
    ACMECalcSet-class                       html  
    finding level-2 HTML links ... done

    ACMESet-class                           html  
    aGFF-class                              html  
    aGFFCalc-class                          html  
    do.aGFF.calc                            html  
    example.agff                            html  
    findClosestGene                         html  
    findRegions                             html  
    generics                                html  
    getRefflat                              html  
    read.resultsGFF                         html  
    write.bedGraph                          html  
    write.sgr                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ACME' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    firstprobe>0) {
    ~~~~~~~~~~^~
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
    lastprobe<(na-1)) {
    ~~~~~~~~~^~~~~~~
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^~
windowChisq.c: At top level:
windowChisq.c:86:20: warning: initialization of 'void * (*)()' from incompatible pointer type 'struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)' [-Wincompatible-pointer-types]
     {"windowChisq",&windowChisq,5},
                    ^
windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun')
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/ACME.buildbin-libdir/ACME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ACME' as ACME_2.45.0.zip
* DONE (ACME)