Back to Multiple platform build/check report for BioC 3.12
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for ACME on malbec1

This page was generated on 2020-08-06 11:29:29 -0400 (Thu, 06 Aug 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ACME PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 14/1882HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.45.0
Sean Davis
Snapshot Date: 2020-08-05 14:50:59 -0400 (Wed, 05 Aug 2020)
URL: https://git.bioconductor.org/packages/ACME
Branch: master
Last Commit: 58f42e2
Last Changed Date: 2020-04-27 14:15:01 -0400 (Mon, 27 Apr 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ACME
Version: 2.45.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL ACME
StartedAt: 2020-08-05 16:03:46 -0400 (Wed, 05 Aug 2020)
EndedAt: 2020-08-05 16:03:51 -0400 (Wed, 05 Aug 2020)
EllapsedTime: 5.0 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL ACME
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘ACME’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.12-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c windowChisq.c -o windowChisq.o
windowChisq.c: In function ‘windowChisq’:
windowChisq.c:58:14: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
    firstprobe>0) {
    ~~~~~~~~~~^~
windowChisq.c:63:13: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
    lastprobe<(na-1)) {
    ~~~~~~~~~^~~~~~~
windowChisq.c:21:11: warning: unused variable ‘xa’ [-Wunused-variable]
   double *xa,*xlocations,*xchivals;
           ^~
windowChisq.c: At top level:
windowChisq.c:86:20: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types]
     {"windowChisq",&windowChisq,5},
                    ^
windowChisq.c:86:20: note: (near initialization for ‘callMethods[0].fun’)
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o ACME.so windowChisq.o -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-ACME/00new/ACME/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ACME)