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XVector

This is the development version of XVector; for the stable release version, see XVector.

Foundation of external vector representation and manipulation in Bioconductor


Bioconductor version: Development (3.19)

Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).

Author: Hervé Pagès and Patrick Aboyoun

Maintainer: Hervé Pagès <hpages.on.github at gmail.com>

Citation (from within R, enter citation("XVector")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("XVector")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataRepresentation, Infrastructure, Software
Version 0.43.1
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 4.0.0), methods, BiocGenerics(>= 0.37.0), S4Vectors(>= 0.27.12), IRanges(>= 2.23.9)
Imports methods, utils, tools, zlibbioc, BiocGenerics, S4Vectors, IRanges
System Requirements
URL https://bioconductor.org/packages/XVector
Bug Reports https://github.com/Bioconductor/XVector/issues
See More
Suggests Biostrings, drosophila2probe, RUnit
Linking To S4Vectors, IRanges
Enhances
Depends On Me Biostrings, triplex
Imports Me BSgenome, ChIPsim, CNEr, compEpiTools, crisprScore, CRISPRseek, dada2, DECIPHER, gcrma, GenomicFeatures, GenomicRanges, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, Modstrings, monaLisa, ProteoDisco, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, SparseArray, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation
Suggests Me IRanges, musicatk
Links To Me Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, Rsamtools, rtracklayer, ShortRead, SparseArray, triplex, VariantAnnotation, VariantFiltering
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package XVector_0.43.1.tar.gz
Windows Binary XVector_0.43.1.zip
macOS Binary (x86_64) XVector_0.43.1.tgz
macOS Binary (arm64) XVector_0.43.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/XVector
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/XVector
Bioc Package Browser https://code.bioconductor.org/browse/XVector/
Package Short Url https://bioconductor.org/packages/XVector/
Package Downloads Report Download Stats