IsoformSwitchAnalyzeR
This is the development version of IsoformSwitchAnalyzeR; for the stable release version, see IsoformSwitchAnalyzeR.
Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data
Bioconductor version: Development (3.20)
Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.
Author: Kristoffer Vitting-Seerup [cre, aut] , Jeroen Gilis [ctb]
Maintainer: Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>
citation("IsoformSwitchAnalyzeR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("IsoformSwitchAnalyzeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IsoformSwitchAnalyzeR")
IsoformSwitchAnalyzeR | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
See More
Suggests | knitr, BSgenome.Hsapiens.UCSC.hg19, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | IsoformSwitchAnalyzeR_2.5.0.tar.gz |
Windows Binary | IsoformSwitchAnalyzeR_2.5.0.zip |
macOS Binary (x86_64) | IsoformSwitchAnalyzeR_2.5.0.tgz |
macOS Binary (arm64) | IsoformSwitchAnalyzeR_2.5.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/IsoformSwitchAnalyzeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IsoformSwitchAnalyzeR |
Bioc Package Browser | https://code.bioconductor.org/browse/IsoformSwitchAnalyzeR/ |
Package Short Url | https://bioconductor.org/packages/IsoformSwitchAnalyzeR/ |
Package Downloads Report | Download Stats |