DOI: 10.18129/B9.bioc.DAMEfinder    

This is the development version of DAMEfinder; for the stable release version, see DAMEfinder.

Finds DAMEs - Differential Allelicly MEthylated regions

Bioconductor version: Development (3.17)

'DAMEfinder' offers functionality for taking methtuple or bismark outputs to calculate ASM scores and compute DAMEs. It also offers nice visualization of methyl-circle plots.

Author: Stephany Orjuela [aut, cre] , Dania Machlab [aut], Mark Robinson [aut]

Maintainer: Stephany Orjuela <sorjuelal at gmail.com>

Citation (from within R, enter citation("DAMEfinder")):


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biocViews Coverage, DNAMethylation, DifferentialMethylation, Software
Version 1.11.0
In Bioconductor since BioC 3.11 (R-4.0) (2.5 years)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports stats, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, readr, SummarizedExperiment, GenomicAlignments, stringr, plyr, VariantAnnotation, parallel, ggplot2, Rsamtools, BiocGenerics, methods, limma, bumphunter, Biostrings, reshape2, cowplot, utils
Suggests BiocStyle, knitr, rmarkdown, testthat, rtracklayer, BSgenome.Hsapiens.UCSC.hg19
BugReports https://github.com/markrobinsonuzh/DAMEfinder/issues
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Source Package DAMEfinder_1.11.0.tar.gz
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Package Short Url https://bioconductor.org/packages/DAMEfinder/
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