Changes in version 1.3.1 o change cmdscale.out for eigen.vectors in methyl_MDS_plot Changes in version 1.3.0 o update with new Bioc version Changes in version 1.1.4 o Add Z score as an alternative ASMsnp score Changes in version 1.1.3 o Add CITATION o Remove "bad chromosome" filtering o Argument `build` in extract_bams() removed Changes in version 1.1.2 o Remove vcfR dependency and add VariantAnnotation Changes in version 1.1.1 o Fix typo in split_bams that excluded some chromosomes Changes in version 0.99.3 o Change some files to other folders Changes in version 0.99.2 o Fix spacing (ggplot code looks funky now) o Remove make_bigwigs func o Fix examples for plotting functions Changes in version 0.99.1 o Fix description file Changes in version 0.99.0 o First version submitted to Bioconductor Changes in version 0.2.0 o New SNP-based ASM score. Includes VCF and BAM files as input. o New p-value assignment methods. o New plotting functions for MDS and Methyl-circle-plots. Changes in version 0.1.13 o Last version before S.Orjuela started working on it.