Stuart Lee
| Snapshot Date: 2023-01-31 10:45:01 -0500 (Tue, 31 Jan 2023) |
| git_url: https://git.bioconductor.org/packages/fluentGenomics |
| git_branch: RELEASE_3_16 |
| git_last_commit: d756798 |
| git_last_commit_date: 2022-11-01 10:34:56 -0500 (Tue, 01 Nov 2022) |
| Back to Workflows build report for BioC 3.16 |
This page was generated on 2023-01-31 14:00:10 -0500 (Tue, 31 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4510 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" | 4289 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4318 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fluentGenomics package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 12/28 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| fluentGenomics 1.10.0 (landing page) Stuart Lee
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | | |||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | ERROR | |||||||||
| Package: fluentGenomics |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics |
| StartedAt: 2023-01-31 11:02:48 -0500 (Tue, 31 Jan 2023) |
| EndedAt: 2023-01-31 11:05:37 -0500 (Tue, 31 Jan 2023) |
| EllapsedTime: 169.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
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* checking for file ‘fluentGenomics/DESCRIPTION’ ... OK
* preparing ‘fluentGenomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fluentGenomics.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "fluentGenomics", and the latter is "Fluent genomics with plyranges and tximeta". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
Error reading bibliography file library.bib:
(line 59, column 14):
unexpected '1'
Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 25
--- failed re-building ‘fluentGenomics.Rmd’
SUMMARY: processing the following file failed:
‘fluentGenomics.Rmd’
Error: Vignette re-building failed.
Execution halted