Back to Workflows build report for BioC 3.16

This page was generated on 2023-01-31 14:00:10 -0500 (Tue, 31 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4510
palomino4Windows Server 2022 Datacenterx644.2.2 (2022-10-31 ucrt) -- "Innocent and Trusting" 4289
lconwaymacOS 12.5.1 Montereyx86_644.2.2 (2022-10-31) -- "Innocent and Trusting" 4318
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for fluentGenomics on lconway


To the developers/maintainers of the fluentGenomics package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 12/28HostnameOS / ArchINSTALLBUILD
fluentGenomics 1.10.0  (landing page)
Stuart Lee
Snapshot Date: 2023-01-31 10:45:01 -0500 (Tue, 31 Jan 2023)
git_url: https://git.bioconductor.org/packages/fluentGenomics
git_branch: RELEASE_3_16
git_last_commit: d756798
git_last_commit_date: 2022-11-01 10:34:56 -0500 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK  NO, version to propagate (1.10.0) is lower than published version (1.11.0)
palomino4Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  

Summary

Package: fluentGenomics
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
StartedAt: 2023-01-31 11:02:48 -0500 (Tue, 31 Jan 2023)
EndedAt: 2023-01-31 11:05:37 -0500 (Tue, 31 Jan 2023)
EllapsedTime: 169.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics
###
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* checking for file ‘fluentGenomics/DESCRIPTION’ ... OK
* preparing ‘fluentGenomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fluentGenomics.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "fluentGenomics", and the latter is "Fluent genomics with plyranges and tximeta". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
Error reading bibliography file library.bib:
(line 59, column 14):
unexpected '1'
Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
pandoc document conversion failed with error 25
--- failed re-building ‘fluentGenomics.Rmd’

SUMMARY: processing the following file failed:
  ‘fluentGenomics.Rmd’

Error: Vignette re-building failed.
Execution halted