| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-09-25 11:36:02 -0400 (Mon, 25 Sep 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4625 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4378 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2223/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| YAPSA 1.26.6 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | ERROR | OK | ERROR | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | ERROR | OK | ERROR | OK | |||||||||
|
To the developers/maintainers of the YAPSA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/YAPSA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: YAPSA |
| Version: 1.26.6 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:YAPSA.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings YAPSA_1.26.6.tar.gz |
| StartedAt: 2023-09-25 02:16:28 -0400 (Mon, 25 Sep 2023) |
| EndedAt: 2023-09-25 02:16:34 -0400 (Mon, 25 Sep 2023) |
| EllapsedTime: 6.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: YAPSA.Rcheck |
| Warnings: NA |
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### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:YAPSA.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings YAPSA_1.26.6.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/YAPSA.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘YAPSA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘YAPSA’ version ‘1.26.6’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘YAPSA’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.17-bioc/meat/YAPSA.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.17-bioc/meat/YAPSA.Rcheck/00check.log’
for details.
YAPSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL YAPSA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘YAPSA’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes Warning in file(con, "w") : cannot open file '/home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-YAPSA/00new/YAPSA/doc/index.html': No such file or directory Error in file(con, "w") : cannot open the connection ERROR: installing vignettes failed * removing ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/YAPSA’ * restoring previous ‘/home/biocbuild/bbs-3.17-bioc/R/site-library/YAPSA’