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This page was generated on 2022-06-24 12:04:59 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4156
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MAGeCKFlute on nebbiolo1


To the developers/maintainers of the MAGeCKFlute package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1063/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MAGeCKFlute 2.0.0  (landing page)
Wubing Zhang
Snapshot Date: 2022-06-23 13:55:15 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/MAGeCKFlute
git_branch: RELEASE_3_15
git_last_commit: 2a3e1ee
git_last_commit_date: 2022-04-26 11:45:54 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MAGeCKFlute
Version: 2.0.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:MAGeCKFlute.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings MAGeCKFlute_2.0.0.tar.gz
StartedAt: 2022-06-23 20:35:33 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 20:39:38 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 244.9 seconds
RetCode: 0
Status:   OK  
CheckDir: MAGeCKFlute.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:MAGeCKFlute.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings MAGeCKFlute_2.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/MAGeCKFlute.Rcheck’
* using R version 4.2.0 (2022-04-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MAGeCKFlute/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MAGeCKFlute’ version ‘2.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MAGeCKFlute’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 18.3Mb
  sub-directories of 1Mb or more:
    extdata  17.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
MAView 10.522    0.2  10.722
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.15-bioc/meat/MAGeCKFlute.Rcheck/00check.log’
for details.



Installation output

MAGeCKFlute.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL MAGeCKFlute
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘MAGeCKFlute’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
snapshotDate(): 2022-04-26
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
snapshotDate(): 2022-04-26
** testing if installed package can be loaded from final location
snapshotDate(): 2022-04-26
** testing if installed package keeps a record of temporary installation path
* DONE (MAGeCKFlute)

Tests output


Example timings

MAGeCKFlute.Rcheck/MAGeCKFlute-Ex.timings

nameusersystemelapsed
BarView0.8680.1761.044
BatchRemove2.1600.2002.355
ConsistencyView0.9460.0521.000
CutoffCalling0.0040.0000.005
DensityDiffView0.9980.0201.017
DensityView0.8630.0200.883
EnrichAnalyzer0.0100.0040.014
EnrichedFilter0.0110.0000.011
EnrichedGeneView0.0090.0000.010
EnrichedView0.010.000.01
FluteMLE0.0010.0000.001
FluteRRA0.0020.0000.001
HeatmapView0.3400.0080.348
IdentBarView0.1470.0120.158
IncorporateDepmap0.1810.0160.199
MAView10.522 0.20010.722
MapRatesView0.3810.0200.402
NormalizeBeta0.9050.0260.932
OmitCommonEssential0.0000.0000.001
RankView0.6750.0120.688
ReadBeta0.2690.0080.278
ReadRRA0.1890.0040.193
ReadsgRRA0.0160.0000.017
ResembleDepmap0.1480.0080.155
ScatterView3.3600.0483.409
Selector0.5390.0200.559
SquareView1.0710.0281.099
TransGeneID2.5940.0562.653
ViolinView1.0570.0201.077
VolcanoView1.6220.0081.631
arrangePathview0.2800.0040.284
enrich.GSE0.010.000.01
enrich.HGT2.1900.0282.219
enrich.ORT4.6500.1604.812
getCols0.0020.0040.006
getGeneAnn000
getOrg0.0010.0000.001
getOrtAnn000
gsGetter0.2780.0080.288
hclustView0.4150.0110.426
loadDepmap000
normalize.loess1.0670.0161.083
sgRankView0.1570.0030.161
writeGMT0.0390.0000.039