Back to Multiple platform build/check report for BioC 3.12
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for CNAnorm on nebbiolo1

This page was generated on 2021-02-22 12:33:28 -0500 (Mon, 22 Feb 2021).

To the developers/maintainers of the CNAnorm package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 332/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNAnorm 1.36.0
Stefano Berri
Snapshot Date: 2021-02-21 14:52:07 -0500 (Sun, 21 Feb 2021)
URL: https://git.bioconductor.org/packages/CNAnorm
Branch: RELEASE_3_12
Last Commit: 9bfd2c4
Last Changed Date: 2020-10-27 10:43:06 -0500 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: CNAnorm
Version: 1.36.0
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL CNAnorm
StartedAt: 2021-02-21 16:05:04 -0500 (Sun, 21 Feb 2021)
EndedAt: 2021-02-21 16:06:14 -0500 (Sun, 21 Feb 2021)
EllapsedTime: 69.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL CNAnorm
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’
* installing *source* package ‘CNAnorm’ ...
** using staged installation
** libs
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c daxpy.f -o daxpy.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c ddot.f -o ddot.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c dgbfa.f -o dgbfa.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c dgbsl.f -o dgbsl.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c dscal.f -o dscal.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c dsmooth.f -o dsmooth.o
f951: Warning: Nonconforming tab character in column 1 of line 14 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 15 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 16 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 17 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 18 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 19 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 20 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 21 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 22 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 23 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 24 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 25 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 26 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 27 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 28 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 29 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 30 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 31 [-Wtabs]
f951: Warning: Nonconforming tab character in column 2 of line 32 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 33 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 34 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 35 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 36 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 37 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 38 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 39 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 40 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 41 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 42 [-Wtabs]
f951: Warning: Nonconforming tab character in column 4 of line 43 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 44 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 45 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 46 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 47 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 48 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 50 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 51 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 52 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 53 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 54 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 55 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 56 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 57 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 58 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 59 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 60 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 61 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 64 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 67 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 68 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 69 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 71 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 72 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 73 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 74 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 75 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 76 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 77 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 78 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 79 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 80 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 81 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 82 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 83 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 84 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 85 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 87 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 88 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 89 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 90 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 91 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 92 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 93 [-Wtabs]
f951: Warning: Nonconforming tab character in column 3 of line 94 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 95 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 96 [-Wtabs]
dsmooth.f:62:20:

   62 |  do 10 i=1,n-1
      |                    1
Warning: Nonconforming tab character at (1) [-Wtabs]
dsmooth.f:70:7:

   70 |      &       diff(i-1)*diff(i+1) .lt. 0.) isplit(i)=1
      |       1
Warning: Nonconforming tab character at (1) [-Wtabs]
dsmooth.f:50:0:

   50 |  function amed3(a,b,c)
      | 
Warning: ‘__result_amed3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2  -Wall -c idamax.f -o idamax.o
gcc -shared -L/home/biocbuild/bbs-3.12-bioc/R/lib -L/usr/local/lib -o CNAnorm.so daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.12-bioc/R/library/00LOCK-CNAnorm/00new/CNAnorm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CNAnorm)