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This page was generated on 2024-05-09 11:37:41 -0400 (Thu, 09 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4748
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4484
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4514
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4480
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 13/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.60.0  (landing page)
Sean Davis
Snapshot Date: 2024-05-08 14:00:19 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/ACME
git_branch: RELEASE_3_19
git_last_commit: 7a1f0e4
git_last_commit_date: 2024-04-30 10:16:39 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for ACME on palomino3


To the developers/maintainers of the ACME package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ACME
Version: 2.60.0
Command: chmod a+r ACME -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ACME
StartedAt: 2024-05-08 17:02:49 -0400 (Wed, 08 May 2024)
EndedAt: 2024-05-08 17:03:28 -0400 (Wed, 08 May 2024)
EllapsedTime: 39.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r ACME -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ACME
###
##############################################################################
##############################################################################


* checking for file 'ACME/DESCRIPTION' ... OK
* preparing 'ACME':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'ACME.Rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "ACME.tex" ' had status 1033
Error: processing vignette 'ACME.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'ACME.pdf' for vignette with name 'ACME' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\RtmpK4FUoH\Rbuild3580493f734c\ACME\vignettes': 'ACME-004.pdf' (562349 bytes), 'ACME.Rnw' (4795 bytes), 'ACME.tex' (7695 bytes), 'testsamp1_raw.bed' (8.20076e+06 bytes), 'testsamp1_raw.sgr' (6.45768e+06 bytes), 'testsamp1_thresh0.95.bed' (8.06321e+06 bytes), 'testsamp1_thresh0.95.sgr' (6.32012e+06 bytes), 'testsamp2_raw.bed' (8.22492e+06 bytes), 'testsamp2_raw.sgr' (6.48184e+06 bytes), 'testsamp2_thresh0.95.bed' (8.06366e+06 bytes), 'testsamp2_thresh0.95.sgr' (6.32056e+06 bytes)
--- failed re-building 'ACME.Rnw'

SUMMARY: processing the following file failed:
  'ACME.Rnw'

Error: Vignette re-building failed.
Execution halted